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Autoencoders in Function Space (2408.01362v2)

Published 2 Aug 2024 in stat.ML and cs.LG

Abstract: Autoencoders have found widespread application in both their original deterministic form and in their variational formulation (VAEs). In scientific applications and in image processing it is often of interest to consider data that are viewed as functions; while discretisation (of differential equations arising in the sciences) or pixellation (of images) renders problems finite dimensional in practice, conceiving first of algorithms that operate on functions, and only then discretising or pixellating, leads to better algorithms that smoothly operate between resolutions. In this paper function-space versions of the autoencoder (FAE) and variational autoencoder (FVAE) are introduced, analysed, and deployed. Well-definedness of the objective governing VAEs is a subtle issue, particularly in function space, limiting applicability. For the FVAE objective to be well defined requires compatibility of the data distribution with the chosen generative model; this can be achieved, for example, when the data arise from a stochastic differential equation, but is generally restrictive. The FAE objective, on the other hand, is well defined in many situations where FVAE fails to be. Pairing the FVAE and FAE objectives with neural operator architectures that can be evaluated on any mesh enables new applications of autoencoders to inpainting, superresolution, and generative modelling of scientific data.

Summary

  • The paper introduces FAE and FVAE models that extend autoencoders to infinite-dimensional function spaces for scientific data.
  • It formulates a finite-information condition ensuring a well-posed ELBO in variational autoencoders applied to discretized PDEs and SDEs.
  • The work demonstrates mesh-invariant neural operators and self-supervised training techniques for tasks like inpainting and superresolution.

Autoencoders in Function Space

Overview

The paper presented by Bunker et al. focuses on extending the concept of autoencoders from finite-dimensional spaces to function spaces. Two main variants are introduced: the functional autoencoder (FAE) and the functional variational autoencoder (FVAE). The paper provides theoretical analyses, practical implementations, and numerical experiments of these models, with applications specifically targeted at scientific data.

Theoretical Contributions

FVAE Objective

The FVAE extends Variational Autoencoders (VAEs) to function spaces by first considering the discretization of data, such as solutions to partial differential equations (PDEs) or scientific data in general. The main difficulty lies in defining a well-posed objective function, which requires ensuring the compatibility of the data distribution and the generative model. This is managed by introducing a finite-information condition, which asserts that the data measure should have finite Kullback-Leibler (KL) divergence with respect to the chosen noise process. If satisfied, this condition allows deriving an evidence lower bound (ELBO) suitable for the infinite-dimensional setting.

The FVAE's objective is thus well-defined under careful selection of the decoder noise. The paper extensively discusses employing stochastic differential equations (SDEs) and Bayesian inference as examples where the finite-information condition holds naturally.

Architecture and Algorithms for FVAE

The authors use neural operator architecture for the encoder and decoder, enabling evaluation over arbitrary meshes. This flexibility is critical in scientific computing, where operations often need to be performed across various resolutions. Self-supervised training techniques further enhance the robustness of these models to mesh changes. The proposed architectures are validated through various numerical experiments involving SDEs and facilitate inpainting, superresolution, and generative modeling across different resolutions.

Issues with FVAEs in Infinite Dimensions

The paper also addresses the inherent challenges faced in infinite-dimensional settings, particularly when the finite-information condition is violated. Such violations can lead to infinities in the ELBO or unbounded training objectives, making optimization infeasible. To demonstrate these issues pragmatically, the paper provides examples where the ELBO diverges or breaks down due to improperly specified decoder noise models.

Introduction of Regularized Autoencoders (FAE)

To overcome the limitations of FVAEs in cases where the finite-information conditions fail, the authors introduce the FAE. This regularized autoencoder does not rely on probabilistic models and hence circumvents the issues associated with KL-divergence in infinite dimensions. The FAE combines a misfit term, which measures the discrepancy between encoded-decoded pairs, with a regularization penalty on the latent space.

Practical Implementation of FAEs

Similar to FVAEs, the FAE employs architectures that can discretize on various meshes. The flexibility in handling different input resolutions and employing mesh-invariant architectures makes FAEs particularly advantageous for complex scientific applications. Special bonuses include self-supervised training, leading to significant improvements in model performance and efficiency.

Numerical Experiments and Applications

The paper showcases the application of FAE and FVAE models on two prominent scientific problems:

  1. Navier-Stokes Equations: Used to demonstrate the flexibility of both FAE and FVAE models in learning low-dimensional representations of complex fluid dynamics. Applications such as inpainting, superresolution, and interpolation in latent space are discussed.
  2. Darcy Flow: Applied to understand pressure fields in porous media, illustrating the benefit of mesh-invariant autoencoders in superresolution tasks and predictive modeling.

Implications and Future Directions

Practical Implications

The proposed models offer substantial improvements in scientific machine learning tasks, particularly when dealing with function data across multiple resolutions. The ability to handle arbitrary meshes and self-supervising capabilities make these autoencoders suitable for various applications in scientific computing.

Theoretical Implications

The work expands the theoretical foundation of autoencoders to infinite dimensions, providing a concrete framework and necessary conditions for their successful application.

Future Research

There are several promising directions for further research:

  • Enhanced Architectures: Investigate more sophisticated neural operator architectures to improve the representation capability, especially in capturing high-frequency components in data.
  • Generative Models: Develop more advanced generative models integrating diffusion processes to enhance predictive performance.
  • Broader Applications: Extend the application beyond synthetic datasets to real-world scientific challenges in domains like climate modeling, material science, and biomedical data analysis.

Conclusion

The paper by Bunker et al. achieves a significant stride in the advancement of autoencoders for function spaces. The introduction of FAE and FVAE frameworks, along with their theoretical underpinnings and practical applications, marks a pivotal contribution to the field. Further explorations and enhancements of these models can bridge the gap to a wide array of complex scientific problems, offering deeper insights and robust solutions.