Data-driven low-dimensional model of a sedimenting flexible fiber (2405.10442v1)
Abstract: The dynamics of flexible filaments entrained in flow, important for understanding many biological and industrial processes, are computationally expensive to model with full-physics simulations. This work describes a data-driven technique to create high-fidelity low-dimensional models of flexible fiber dynamics using machine learning; the technique is applied to sedimentation in a quiescent, viscous Newtonian fluid, using results from detailed simulations as the data set. The approach combines an autoencoder neural network architecture to learn a low-dimensional latent representation of the filament shape, with a neural ODE that learns the evolution of the particle in the latent state. The model was designed to model filaments of varying flexibility, characterized by an elasto-gravitational number $\mathcal{B}$, and was trained on a data set containing the evolution of fibers beginning at set angles of inclination. For the range of $\mathcal{B}$ considered here (100-10000), the filament shape dynamics can be represented with high accuracy with only four degrees of freedom, in contrast to the 93 present in the original bead-spring model used to generate the dynamic trajectories. We predict the evolution of fibers set at arbitrary angles and demonstrate that our data-driven model can accurately forecast the evolution of a fiber at both trained and untrained elasto-gravitational numbers.
- Y. Yu and M. Graham, Free-space and near-wall dynamics of a flexible sheet sedimenting in stokes flow, arXiv , 2310.08722 (2023).
- M. J. Shelley, The dynamics of microtubule/motor-protein assemblies in biology and physics, Annual Review of Fluid Mechanics 48, 487 (2016).
- F. Lundell, L. D. Soderberg, and P. H. Alfredsson, Fluid mechanics of papermaking, Annual Review of Fluid Mechanics 43, 195 (2011).
- M. D. Graham, Fluid dynamics of dissolved polymer molecules in confined geometries, Annual Review of Fluid Mechanics 43, 273 (2011).
- Y. Yu and M. Graham, Coil-stretch-like transition of elastic sheets in extensional flows, Soft Matter 17, 543 (2021).
- Y. Yu and M. Graham, Wrinkling and multiplicity in the dynamics of deformable sheets in uniaxial extensional flow, Physical Review Fluids 7, 023601 (2022).
- X. Xu and A. Nadim, Deformation and orientation of an elastic slender body sedimenting in a viscous liquid, Physics of Fluids 6, 2889 (1994).
- X. Schlagberger and R. R. Netz, Orientation of elastic rods in homogeneous stokes flow, Europhysics Letters 70, 129 (2005).
- M. C. Lagomarsino, I. Pagonabarraga, and C. P. Lowe, Hydrodynamic induced deformation and orientation of a microscopic elastic filament, Physical Review Fluids 94, 148104 (2005).
- B. Shojaei and H. Dehghani, The sedimentation of slim flexible particles in stokes flow, Indian Journal of Science and Technology 8, 1 (2015).
- B. Delmotte, E. Climent, and F. Plouraboué, A general formulation of bead models applied to flexible fibers and active filaments at low reynolds number, Hournal of Computational Physics 286, 14 (2015).
- S. Ebrahimi and P. Bagchi, A computational study of red blood cell deformability effect on hemodynamic alteration in capillary vessel networks, Scientific Reports 12, 4304 (2023).
- A. J. Linot and M. D. Graham, Data-driven reduced-order modeling of spatiotemporal chaos with neural ordinary differential equations, Chaos 32, 073110 (2022).
- R. Vinuesa and S. L. Brunton, Enhancing computational fluid dynamics with machine learning, Nature Computational Science 2, 358 (2022).
- A. J. Fox, C. R. Constante-Amores, and M. D. Graham, Predicting extreme events in a data-driven model of turbulent shear flow using an atlas of charts, Physical Review Fluids 8, 094401 (2023).
- A. J. Linot and M. D. Graham, Deep learning to discover and predict dynamics on an inertial manifold, Physical Review E 101, 062209 (2020).
- N. Omata and S. Shirayama, A novel method of low-dimensional representation for temporal behavior of flow fields using deep autoencoder, AIP Advances 9, 015006 (2019).
- C. E. Perez De Jesus and M. D. Graham, Data-driven low-dimensional dynamic model of Kolmogorov flow, arXiv , 2210.16708 (2022).
- S. L. Brunton, B. R. Noack, and P. Koumoutsakos, Machine learning for fluid mechanics, Annual Review of Fluid Mechanics 52, 477 (2020).
- K. Zeng, A. J. Linot, and M. D. Graham, Data-driven control of spatiotemporal chaos with reduced-order neural ode-based models and reinforcement learning, Proceedings of the Royal Society A 478, 20220297 (2023b).
- Z. Ma, Z. Ye, and W. Pan, Fast simulation of particulate suspensions enabled by graph neural network, Computer Methods in Applied Mechanics and Engineering 400, 115496 (2022).
- A. M. Słowicka, E. Wajnryb, and M. L. Ekiel-Jeżewska, Lateral migration of flexible fibers in poiseuille flow between two parallel planar solid walls, The European Physical Journal E 36, 31 (2013).
- A. M. Słowicka, E. Wajnryb, and M. L. Ekiel-Jeżewska, Dynamics of flexible fibers in shear flow, The Journal of Chemical Physics 143, 124904 (2015).