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PCa-RadHop: A Transparent and Lightweight Feed-forward Method for Clinically Significant Prostate Cancer Segmentation (2403.15969v1)

Published 24 Mar 2024 in eess.IV

Abstract: Prostate Cancer is one of the most frequently occurring cancers in men, with a low survival rate if not early diagnosed. PI-RADS reading has a high false positive rate, thus increasing the diagnostic incurred costs and patient discomfort. Deep learning (DL) models achieve a high segmentation performance, although require a large model size and complexity. Also, DL models lack of feature interpretability and are perceived as ``black-boxes" in the medical field. PCa-RadHop pipeline is proposed in this work, aiming to provide a more transparent feature extraction process using a linear model. It adopts the recently introduced Green Learning (GL) paradigm, which offers a small model size and low complexity. PCa-RadHop consists of two stages: Stage-1 extracts data-driven radiomics features from the bi-parametric Magnetic Resonance Imaging (bp-MRI) input and predicts an initial heatmap. To reduce the false positive rate, a subsequent stage-2 is introduced to refine the predictions by including more contextual information and radiomics features from each already detected Region of Interest (ROI). Experiments on the largest publicly available dataset, PI-CAI, show a competitive performance standing of the proposed method among other deep DL models, achieving an area under the curve (AUC) of 0.807 among a cohort of 1,000 patients. Moreover, PCa-RadHop maintains orders of magnitude smaller model size and complexity.

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References (57)
  1. Computer-aided classification of prostate cancer grade groups from mri images using texture features and stacked sparse autoencoder. Computerized Medical Imaging and Graphics 69, 60–68.
  2. Computer-aided diagnosis of clinically significant prostate cancer from mri images using sparse autoencoder and random forest classifier. Biocybernetics and Biomedical Engineering 38, 733–744.
  3. Radiomic features on mri enable risk categorization of prostate cancer patients on active surveillance: Preliminary findings. Journal of Magnetic Resonance Imaging 48, 818–828.
  4. Prostatex challenges for computerized classification of prostate lesions from multiparametric magnetic resonance images. Journal of Medical Imaging 5, 044501–044501.
  5. Maps: a quantitative radiomics approach for prostate cancer detection. IEEE Transactions on Biomedical Engineering 63, 1145–1156.
  6. Joint prostate cancer detection and gleason score prediction in mp-mri via focalnet. IEEE transactions on medical imaging 38, 2496–2506.
  7. Prostate cancer detection and segmentation in multi-parametric mri via cnn and conditional random field, in: 2019 IEEE 16th International Symposium on Biomedical Imaging (ISBI 2019), IEEE. pp. 1900–1904.
  8. Xgboost: extreme gradient boosting. R package version 0.4-2 1, 1–4.
  9. Pixelhop++: A small successive-subspace-learning-based (ssl-based) model for image classification, in: 2020 IEEE International Conference on Image Processing (ICIP), IEEE. pp. 3294–3298.
  10. Clinically significant prostate cancer detection on mri: A radiomic shape features study. European journal of radiology 116, 144–149.
  11. Deep learning regression for prostate cancer detection and grading in bi-parametric mri. IEEE Transactions on Biomedical Engineering 68, 374–383.
  12. Prostattention-net: A deep attention model for prostate cancer segmentation by aggressiveness in mri scans. Medical Image Analysis 77, 102347.
  13. Prostate cancer semantic segmentation by gleason score group in bi-parametric mri with self attention model on the peripheral zone, in: Medical Imaging with Deep Learning, PMLR. pp. 193–204.
  14. A fully automatic computer aided diagnosis system for peripheral zone prostate cancer detection using multi-parametric magnetic resonance imaging. Computerized Medical Imaging and Graphics 46, 219–226.
  15. The biology underlying molecular imaging in oncology: from genome to anatome and back again. Clinical radiology 65, 517–521.
  16. Radiomic features for prostate cancer detection on mri differ between the transition and peripheral zones: preliminary findings from a multi-institutional study. Journal of Magnetic Resonance Imaging 46, 184–193.
  17. Prostate lesion segmentation in mr images using radiomics based deeply supervised u-net. Biocybernetics and Biomedical Engineering 40, 1421–1435.
  18. Application of u-net based multiparameter magnetic resonance image fusion in the diagnosis of prostate cancer. IEEE Access 9, 33756–33768.
  19. nnu-net: a self-configuring method for deep learning-based biomedical image segmentation. Nature methods 18, 203–211.
  20. Retina u-net: Embarrassingly simple exploitation of segmentation supervision for medical object detection, in: Machine Learning for Health Workshop, PMLR. pp. 171–183.
  21. Assessment of pi-rads v2 for the detection of prostate cancer. European journal of radiology 85, 726–731.
  22. A deep learning approach to diagnostic classification of prostate cancer using pathology–radiology fusion. Journal of Magnetic Resonance Imaging 54, 462–471.
  23. On data-driven saak transform. Journal of Visual Communication and Image Representation 50, 237–246.
  24. Green learning: Introduction, examples and outlook. Journal of Visual Communication and Image Representation , 103685.
  25. Interpretable convolutional neural networks via feedforward design. Journal of Visual Communication and Image Representation .
  26. Radiomics: extracting more information from medical images using advanced feature analysis. European journal of cancer 48, 441–446.
  27. Segmentation of cardiac structures via successive subspace learning with saab transform from cine mri, in: 2021 43rd Annual International Conference of the IEEE Engineering in Medicine & Biology Society (EMBC), IEEE. pp. 3535–3538.
  28. Voxelhop: Successive subspace learning for als disease classification using structural mri. IEEE journal of biomedical and health informatics 26, 1128–1139.
  29. Cancer treatment and survivorship statistics, 2019. CA: a cancer journal for clinicians 69, 363–385.
  30. V-net: Fully convolutional neural networks for volumetric medical image segmentation, in: 2016 Fourth International Conference on 3D Vision (3DV), pp. 565–571.
  31. Future perspective of focal therapy for localized prostate cancer. Asian Journal of Urology 8, 354–361.
  32. U-net: Convolutional networks for biomedical image segmentation. 1505.04597.
  33. Accuracy of tumor segmentation from multi-parametric prostate mri and 18f-choline pet/ct for focal prostate cancer therapy applications. EJNMMI research 8, 1–14.
  34. Successive subspace learning: An overview. arXiv preprint arXiv:2103.00121 .
  35. Artificial intelligence and radiologists at prostate cancer detection in mri—the pi-cai challenge, in: Medical Imaging with Deep Learning, short paper track.
  36. Deep-learning-based artificial intelligence for pi-rads classification to assist multiparametric prostate mri interpretation: A development study. Journal of Magnetic Resonance Imaging 52, 1499–1507.
  37. An automated two-step pipeline for aggressive prostate lesion detection from multi-parametric mr sequence. AMIA Summits on Translational Science Proceedings 2020, 552.
  38. Classification of cancer at prostate mri: deep learning versus clinical pi-rads assessment. Radiology 293, 607–617.
  39. Pi-rads version 2: detection of clinically significant cancer in patients with biopsy gleason score 6 prostate cancer. American Journal of Roentgenology 209, W1–W9.
  40. Patient-level prediction of multi-classification task at prostate mri based on end-to-end framework learning from diagnostic logic of radiologists. IEEE Transactions on Biomedical Engineering 68, 3690–3700.
  41. U-net and its variants for medical image segmentation: A review of theory and applications. Ieee Access 9, 82031–82057.
  42. Cancer statistics, 2023. CA: a cancer journal for clinicians 73, 17–48.
  43. Radiomics and machine learning of multisequence multiparametric prostate mri: Towards improved non-invasive prostate cancer characterization. PLoS One 14, e0217702.
  44. Automated detection of clinically significant prostate cancer in mp-mri images based on an end-to-end deep neural network. IEEE transactions on medical imaging 37, 1127–1139.
  45. Pi-rads prostate imaging–reporting and data system: 2015, version 2. European urology 69, 16–40.
  46. ipca-net: A cnn-based framework for predicting incidental prostate cancer using multiparametric mri. Computerized Medical Imaging and Graphics 110, 102309.
  47. Fully automated detection of prostate transition zone tumors on t2-weighted and apparent diffusion coefficient (adc) map mr images using u-net ensemble. Medical Physics 48, 6889–6900.
  48. Co-trained convolutional neural networks for automated detection of prostate cancer in multi-parametric mri. Medical image analysis 42, 212–227.
  49. E-pixelhop: An enhanced pixelhop method for object classification, in: 2021 Asia-Pacific Signal and Information Processing Association Annual Summit and Conference (APSIPA ASC), IEEE. pp. 1475–1482.
  50. On supervised feature selection from high dimensional feature spaces. APSIPA Transactions on Signal and Information Processing 11.
  51. Radiomics in prostate cancer: basic concepts and current state-of-the-art. Chinese Journal of Academic Radiology 2, 47–55.
  52. Unified focal loss: Generalising dice and cross entropy-based losses to handle class imbalanced medical image segmentation. Computerized Medical Imaging and Graphics 95, 102026.
  53. Prostate cancer detection using deep convolutional neural networks. Scientific reports 9, 19518.
  54. False positive reduction using multiscale contextual features for prostate cancer detection in multi-parametric mri scans, in: 2020 IEEE 17th international symposium on biomedical imaging (ISBI), IEEE. pp. 1355–1359.
  55. Deep attentive panoptic model for prostate cancer detection using biparametric mri scans, in: Medical Image Computing and Computer Assisted Intervention–MICCAI 2020: 23rd International Conference, Lima, Peru, October 4–8, 2020, Proceedings, Part IV 23, Springer. pp. 594–604.
  56. Z-ssmnet: A zonal-aware self-supervised mesh network for prostate cancer detection and diagnosis in bpmri. arXiv preprint arXiv:2212.05808 .
  57. Cross-modal prostate cancer segmentation via self-attention distillation. IEEE Journal of Biomedical and Health Informatics 26, 5298–5309.
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