Papers
Topics
Authors
Recent
Gemini 2.5 Flash
Gemini 2.5 Flash
97 tokens/sec
GPT-4o
53 tokens/sec
Gemini 2.5 Pro Pro
43 tokens/sec
o3 Pro
4 tokens/sec
GPT-4.1 Pro
47 tokens/sec
DeepSeek R1 via Azure Pro
28 tokens/sec
2000 character limit reached

Artificial Intelligence for Complex Network: Potential, Methodology and Application (2402.16887v1)

Published 23 Feb 2024 in cs.SI, cs.AI, cs.LG, and physics.soc-ph

Abstract: Complex networks pervade various real-world systems, from the natural environment to human societies. The essence of these networks is in their ability to transition and evolve from microscopic disorder-where network topology and node dynamics intertwine-to a macroscopic order characterized by certain collective behaviors. Over the past two decades, complex network science has significantly enhanced our understanding of the statistical mechanics, structures, and dynamics underlying real-world networks. Despite these advancements, there remain considerable challenges in exploring more realistic systems and enhancing practical applications. The emergence of AI technologies, coupled with the abundance of diverse real-world network data, has heralded a new era in complex network science research. This survey aims to systematically address the potential advantages of AI in overcoming the lingering challenges of complex network research. It endeavors to summarize the pivotal research problems and provide an exhaustive review of the corresponding methodologies and applications. Through this comprehensive survey-the first of its kind on AI for complex networks-we expect to provide valuable insights that will drive further research and advancement in this interdisciplinary field.

Definition Search Book Streamline Icon: https://streamlinehq.com
References (301)
  1. Microsoft Academic. Microsoft academic graph, 2021.
  2. Predicting cascading failures in power systems using graph convolutional networks. In NeurIPS 2021 Workshop on Tackling Climate Change with Machine Learning, 2021.
  3. Statistical mechanics of complex networks. Reviews of modern physics, 74(1):47, 2002.
  4. Error and attack tolerance of complex networks. nature, 406(6794):378–382, 2000.
  5. Stefano Allesina and Si Tang. Stability criteria for complex ecosystems. Nature, 483(7388):205–208, 2012.
  6. Powergraph: A power grid benchmark dataset for graph neural networks. In New Frontiers in Graph Learning (GLFrontiers) Workshop@ NeurIPS 2023, 2023.
  7. LAN Amaral and JM Ottino. Complex systems and networks: challenges and opportunities for chemical and biological engineers. Chemical Engineering Science, 59(8-9):1653–1666, 2004.
  8. Robustness and resilience of complex networks. Nature Reviews Physics, pages 1–18, 2024.
  9. Neural ordinary differential equation control of dynamics on graphs. Physical Review Research, 4(1):013221, 2022.
  10. Data-driven control of complex networks. Nature communications, 12(1):1429, 2021.
  11. Emergence of scaling in random networks. science, 286(5439):509–512, 1999.
  12. Universality in network dynamics. Nature physics, 9(10):673–681, 2013.
  13. Multiscale stochastic prediction of electricity demand in smart grids using bayesian networks. Applied energy, 193:369–380, 2017.
  14. The physics of higher-order interactions in complex systems. Nature Physics, 17(10):1093–1098, 2021.
  15. Networks beyond pairwise interactions: Structure and dynamics. Physics Reports, 874:1–92, 2020.
  16. Higher-order organization of complex networks. Science, 353(6295):163–166, 2016.
  17. Bose-einstein condensation in complex networks. Physical review letters, 86(24):5632, 2001.
  18. Estimating and forecasting spatial population dynamics of apex predators using transnational genetic monitoring. Proceedings of the National Academy of Sciences, 117(48):30531–30538, 2020.
  19. The structure and dynamics of networks with higher order interactions. Physics Reports, 1018:1–64, 2023.
  20. Complex networks: Structure and dynamics. Physics reports, 424(4-5):175–308, 2006.
  21. Netgan: Generating graphs via random walks. In International conference on machine learning, pages 610–619. PMLR, 2018.
  22. Ai pontryagin or how artificial neural networks learn to control dynamical systems. Nature communications, 13(1):333, 2022.
  23. Influence of fake news in twitter during the 2016 us presidential election. Nature communications, 10(1):7, 2019.
  24. Catastrophic cascade of failures in interdependent networks. Nature, 464(7291):1025–1028, 2010.
  25. A comprehensive survey of graph embedding: Problems, techniques, and applications. IEEE transactions on knowledge and data engineering, 30(9):1616–1637, 2018.
  26. Diversity spurs diversification in ecological communities. Nature Communications, 8(1):15810, 2017.
  27. Mobility network models of covid-19 explain inequities and inform reopening. Nature, 589(7840):82–87, 2021.
  28. Contingency-aware influence maximization: A reinforcement learning approach. In Uncertainty in Artificial Intelligence, pages 1535–1545. PMLR, 2021.
  29. Social physics informed diffusion model for crowd simulation. In Proceedings of the AAAI Conference on Artificial Intelligence, volume 38, 2024.
  30. Autoreservoir computing for multistep ahead prediction based on the spatiotemporal information transformation. Nature communications, 11(1):4568, 2020.
  31. Efficient and degree-guided graph generation via discrete diffusion modeling. In Andreas Krause, Emma Brunskill, Kyunghyun Cho, Barbara Engelhardt, Sivan Sabato, and Jonathan Scarlett, editors, International Conference on Machine Learning, ICML 2023, 23-29 July 2023, Honolulu, Hawaii, USA, volume 202 of Proceedings of Machine Learning Research, pages 4585–4610. PMLR, 2023.
  32. Iterative deep graph learning for graph neural networks: Better and robust node embeddings. Advances in neural information processing systems, 33:19314–19326, 2020.
  33. K Claffy. Internet tomography, nature web matters. http://www. nature. com/nature/webmatters/tomog/tomog. html, 1999.
  34. Clarivate Analytics. Web of science. https://www.webofscience.com. Accessed on November 25, 2023.
  35. Complex systems: Features, similarity and connectivity. Physics Reports, 861:1–41, 2020.
  36. Do we really need complicated model architectures for temporal networks? In ICLR. OpenReview.net, 2023.
  37. Latent-graph learning for disease prediction. In Medical Image Computing and Computer Assisted Intervention–MICCAI 2020: 23rd International Conference, Lima, Peru, October 4–8, 2020, Proceedings, Part II 23, pages 643–653. Springer, 2020.
  38. Unsupervised joint k-node graph representations with compositional energy-based models. Advances in Neural Information Processing Systems, 33:17536–17547, 2020.
  39. Discovering symbolic models from deep learning with inductive biases. Advances in Neural Information Processing Systems, 33:17429–17442, 2020.
  40. Recovery coupling in multilayer networks. Nature communications, 13(1):955, 2022.
  41. Advancing mathematics by guiding human intuition with ai. Nature, 600(7887):70–74, 2021.
  42. Latent graph inference using product manifolds. In The Eleventh International Conference on Learning Representations, 2022.
  43. BERT: pre-training of deep bidirectional transformers for language understanding. In Jill Burstein, Christy Doran, and Thamar Solorio, editors, Proceedings of the 2019 Conference of the North American Chapter of the Association for Computational Linguistics: Human Language Technologies, NAACL-HLT 2019, Minneapolis, MN, USA, June 2-7, 2019, Volume 1 (Long and Short Papers), pages 4171–4186. Association for Computational Linguistics, 2019.
  44. Structural patterns and generative models of real-world hypergraphs. In Proceedings of the 26th ACM SIGKDD International Conference on Knowledge Discovery & Data Mining, pages 176–186, 2020.
  45. Complex systems analysis of series of blackouts: Cascading failure, critical points, and self-organization. Chaos: An Interdisciplinary Journal of Nonlinear Science, 17(2), 2007.
  46. Multiple rumor source detection with graph convolutional networks. In Proceedings of the 28th ACM international conference on information and knowledge management, pages 569–578, 2019.
  47. Critical phenomena in complex networks. Reviews of Modern Physics, 80(4):1275, 2008.
  48. The influence of predator–prey population dynamics on the long-term evolution of food web structure. Journal of Theoretical Biology, 208(1):91–107, 2001.
  49. Disentangled spatiotemporal graph generative models. In Proceedings of the AAAI Conference on Artificial Intelligence, volume 36, pages 6541–6549, 2022.
  50. Effective dynamics of generative adversarial networks. Physical Review X, 13(4):041004, 2023.
  51. Controlling complex networks with complex nodes. Nature Reviews Physics, 5(4):250–262, 2023.
  52. Domirank centrality reveals structural fragility of complex networks via node dominance. Nature Communications, 15(1):56, 2024.
  53. Modelling disease outbreaks in realistic urban social networks. Nature, 429(6988):180–184, 2004.
  54. Searching for spin glass ground states through deep reinforcement learning. Nature Communications, 14(1):725, 2023.
  55. Finding key players in complex networks through deep reinforcement learning. Nature machine intelligence, 2(6):317–324, 2020.
  56. Slaps: Self-supervision improves structure learning for graph neural networks. Advances in Neural Information Processing Systems, 34:22667–22681, 2021.
  57. Discovering faster matrix multiplication algorithms with reinforcement learning. Nature, 610(7930):47–53, 2022.
  58. Hypergraph neural networks. In Proceedings of the AAAI conference on artificial intelligence, volume 33, pages 3558–3565, 2019.
  59. Political polarization of news media and influencers on twitter in the 2016 and 2020 us presidential elections. Nature Human Behaviour, pages 1–13, 2023.
  60. Learning discrete structures for graph neural networks. In International conference on machine learning, pages 1972–1982. PMLR, 2019.
  61. Privacy-preserving individual-level covid-19 infection prediction via federated graph learning. arXiv preprint arXiv:2311.06049, 2023.
  62. Large language models empowered agent-based modeling and simulation: A survey and perspectives. arXiv preprint arXiv:2312.11970, 2023.
  63. S3: Social-network simulation system with large language model-empowered agents. arXiv preprint arXiv:2307.14984, 2023.
  64. Universal resilience patterns in complex networks. Nature, 530(7590):307–312, 2016.
  65. Autonomous inference of complex network dynamics from incomplete and noisy data. Nature Computational Science, 2(3):160–168, 2022.
  66. Data-driven inference of complex system dynamics: A mini-review. Europhysics Letters, 2023.
  67. Universal scaling relations in food webs. Nature, 423(6936):165–168, 2003.
  68. Diversity of information pathways drives sparsity in real-world networks. Nature Physics, pages 1–8, 2024.
  69. Predicting materials properties without crystal structure: Deep representation learning from stoichiometry. Nature communications, 11(1):6280, 2020.
  70. Spanish Government. Covid-19 en españa. https://cnecovid.isciii.es/, 2023.
  71. Machine learning dismantling and early-warning signals of disintegration in complex systems. Nature Communications, 12(1):5190, 2021.
  72. Hamiltonian neural networks. Advances in neural information processing systems, 32, 2019.
  73. node2vec: Scalable feature learning for networks. In Proceedings of the 22nd ACM SIGKDD international conference on Knowledge discovery and data mining, pages 855–864, 2016.
  74. Deep generative models for spatial networks. In Proceedings of the 27th ACM SIGKDD Conference on Knowledge Discovery & Data Mining, pages 505–515, 2021.
  75. A systematic survey on deep generative models for graph generation. IEEE Transactions on Pattern Analysis and Machine Intelligence, 45(5):5370–5390, 2022.
  76. Learning heterogeneous interaction strengths by trajectory prediction with graph neural network. arXiv preprint arXiv:2208.13179, 2022.
  77. Grale: Designing networks for graph learning. In Proceedings of the 26th ACM SIGKDD international conference on knowledge discovery & data mining, pages 2523–2532, 2020.
  78. Inductive representation learning on large graphs. Advances in neural information processing systems, 30, 2017.
  79. A synergistic future for ai and ecology. Proceedings of the National Academy of Sciences, 120(38):e2220283120, 2023.
  80. Trrust v2: an expanded reference database of human and mouse transcriptional regulatory interactions. Nucleic acids research, 46(D1):D380–D386, 2018.
  81. Gat-mf: Graph attention mean field for very large scale multi-agent reinforcement learning. In Proceedings of the 29th ACM SIGKDD Conference on Knowledge Discovery and Data Mining, pages 685–697, 2023.
  82. Reinforcement learning enhances the experts: Large-scale covid-19 vaccine allocation with multi-factor contact network. In Proceedings of the 28th ACM SIGKDD Conference on Knowledge Discovery and Data Mining, pages 4684–4694, 2022.
  83. Exact analytical solutions of the susceptible-infected-recovered (sir) epidemic model and of the sir model with equal death and birth rates. Applied Mathematics and Computation, 236:184–194, 2014.
  84. Dynamic patterns of information flow in complex networks. Nature communications, 8(1):2181, 2017.
  85. DO Hebb. The organization of behavior. a neuropsychological theory. 1949.
  86. Forecasting covid-19 spreading through an ensemble of classical and machine learning models: Spain’s case study. Scientific Reports, 13(1):6750, 2023.
  87. Fast folding and comparison of rna secondary structures. Monatshefte fur chemie, 125:167–167, 1994.
  88. Stochastic blockmodels: First steps. Social networks, 5(2):109–137, 1983.
  89. John J Hopfield. Neural networks and physical systems with emergent collective computational abilities. Proceedings of the national academy of sciences, 79(8):2554–2558, 1982.
  90. Pypsa-eur: An open optimisation model of the european transmission system. Energy strategy reviews, 22:207–215, 2018.
  91. Two-stage denoising diffusion model for source localization in graph inverse problems. arXiv preprint arXiv:2304.08841, 2023.
  92. Hyper-path-based representation learning for hyper-networks. In Proceedings of the 28th ACM International Conference on Information and Knowledge Management, pages 449–458, 2019.
  93. Safe-nora: Safe reinforcement learning-based mobile network resource allocation for diverse user demands. In Proceedings of the 32nd ACM International Conference on Information and Knowledge Management, pages 885–894, 2023.
  94. Learning continuous system dynamics from irregularly-sampled partial observations. Advances in Neural Information Processing Systems, 33:16177–16187, 2020.
  95. Coupled graph ode for learning interacting system dynamics. In Proceedings of the 27th ACM SIGKDD Conference on Knowledge Discovery & Data Mining, pages 705–715, 2021.
  96. Generalizing graph ode for learning complex system dynamics across environments. In Proceedings of the 29th ACM SIGKDD Conference on Knowledge Discovery and Data Mining, pages 798–809, 2023.
  97. Large-scale urban cellular traffic generation via knowledge-enhanced gans with multi-periodic patterns. In Proceedings of the 29th ACM SIGKDD Conference on Knowledge Discovery and Data Mining, pages 4195–4206, 2023.
  98. T2-gnn: Graph neural networks for graphs with incomplete features and structure via teacher-student distillation. In Proceedings of the AAAI Conference on Artificial Intelligence, volume 37, pages 4339–4346, 2023.
  99. Generative models for graph-based protein design. Advances in neural information processing systems, 32, 2019.
  100. Lense: Learning to navigate subgraph embeddings for large-scale combinatorial optimisation. In International Conference on Machine Learning, pages 9622–9638. PMLR, 2022.
  101. Ernst Ising. Beitrag zur theorie des ferro-und paramagnetismus. PhD thesis, Grefe & Tiedemann Hamburg, Germany, 1924.
  102. Stability and diversity of ecosystems. science, 317(5834):58–62, 2007.
  103. Signal propagation in complex networks. Physics Reports, 1017:1–96, 2023.
  104. Community-based dynamic graph learning for popularity prediction. In Proceedings of the 29th ACM SIGKDD Conference on Knowledge Discovery and Data Mining, KDD ’23, page 930–940, New York, NY, USA, 2023. Association for Computing Machinery.
  105. True nonlinear dynamics from incomplete networks. In Proceedings of the AAAI Conference on Artificial Intelligence, volume 34, pages 131–138, 2020.
  106. Harnessing tipping points in complex ecological networks. Journal of the Royal Society Interface, 16(158):20190345, 2019.
  107. Dual graph convolution architecture search for travel time estimation. ACM Transactions on Intelligent Systems and Technology, 14(4):1–23, 2023.
  108. Graph structure learning for robust graph neural networks. In Proceedings of the 26th ACM SIGKDD international conference on knowledge discovery & data mining, pages 66–74, 2020.
  109. Learning graph structure with a finite-state automaton layer. Advances in Neural Information Processing Systems, 33:3082–3093, 2020.
  110. Highly accurate protein structure prediction with alphafold. Nature, 596(7873):583–589, 2021.
  111. Dissecting cell identity via network inference and in silico gene perturbation. Nature, 614(7949):742–751, 2023.
  112. Multiscale dynamic human mobility flow dataset in the us during the covid-19 epidemic. Scientific data, 7(1):390, 2020.
  113. Physics-informed machine learning. Nature Reviews Physics, 3(6):422–440, 2021.
  114. Differentiable graph module (dgm) for graph convolutional networks. IEEE Transactions on Pattern Analysis and Machine Intelligence, 45(2):1606–1617, 2022.
  115. Neural relational inference for interacting systems. In International conference on machine learning, pages 2688–2697. PMLR, 2018.
  116. Semi-supervised classification with graph convolutional networks. arXiv preprint arXiv:1609.02907, 2016.
  117. Variational graph auto-encoders. arXiv preprint arXiv:1611.07308, 2016.
  118. Flowgen: A generative model for flow graphs. In Proceedings of the 28th ACM SIGKDD Conference on Knowledge Discovery and Data Mining, pages 813–823, 2022.
  119. Connectivity of growing random networks. Physical review letters, 85(21):4629, 2000.
  120. On-the-fly closed-loop materials discovery via bayesian active learning. Nature communications, 11(1):5966, 2020.
  121. A survey on hypergraph mining: Patterns, tools, and generators. arXiv preprint arXiv:2401.08878, 2024.
  122. Score-based generative modeling for de novo protein design. Nature Computational Science, pages 1–11, 2023.
  123. Dynamic graph convolutional recurrent network for traffic prediction: Benchmark and solution. ACM Transactions on Knowledge Discovery from Data, 17(1):1–21, 2023.
  124. Inferring transcription factor regulatory networks from single-cell atac-seq data based on graph neural networks. Nature Machine Intelligence, 4(4):389–400, 2022.
  125. Scaling up dynamic graph representation learning via spiking neural networks. In Proceedings of the AAAI Conference on Artificial Intelligence, volume 37, pages 8588–8596, 2023.
  126. Global dynamics of a seir model with varying total population size. Mathematical biosciences, 160(2):191–213, 1999.
  127. Learning slow and fast system dynamics via automatic separation of time scales. In Proceedings of the 29th ACM SIGKDD Conference on Knowledge Discovery and Data Mining, pages 4380–4390, 2023.
  128. Carbon emissions of 5g mobile networks in china. Nature Sustainability, pages 1–12, 2023.
  129. Diffusion convolutional recurrent neural network: Data-driven traffic forecasting. arXiv preprint arXiv:1707.01926, 2017.
  130. Learning joint relational co-evolution in spatial-temporal knowledge graph for smes supply chain prediction. In Proceedings of the 29th ACM SIGKDD Conference on Knowledge Discovery and Data Mining, KDD ’23, page 4426–4436, New York, NY, USA, 2023. Association for Computing Machinery.
  131. Efficient graph generation with graph recurrent attention networks. Advances in neural information processing systems, 32, 2019.
  132. Protein–protein contact prediction by geometric triangle-aware protein language models. Nature Machine Intelligence, pages 1–10, 2023.
  133. Deep graph representation learning and optimization for influence maximization. In International Conference on Machine Learning, pages 21350–21361. PMLR, 2023.
  134. Emergence of polarization in coevolving networks. Physical Review Letters, 130(3):037401, 2023.
  135. Topological structure of complex predictions. Nature Machine Intelligence, pages 1–8, 2023.
  136. Controllability of complex networks. nature, 473(7346):167–173, 2011.
  137. Searching for critical power system cascading failures with graph convolutional network. IEEE Transactions on Control of Network Systems, 8(3):1304–1313, 2021.
  138. Regnetwork: an integrated database of transcriptional and post-transcriptional regulatory networks in human and mouse. Database, 2015:bav095, 2015.
  139. Motif-preserving dynamic attributed network embedding. In Proceedings of the Web Conference 2021, pages 1629–1638, 2021.
  140. Machine learning conservation laws from trajectories. Physical Review Letters, 126(18):180604, 2021.
  141. Practical synthetic human trajectories generation based on variational point processes. In Proceedings of the 29th ACM SIGKDD Conference on Knowledge Discovery and Data Mining, pages 4561–4571, 2023.
  142. Generating fine-grained surrogate temporal networks. Communications Physics, 7(1):22, 2024.
  143. Vital nodes identification in complex networks. Physics reports, 650:1–63, 2016.
  144. Link prediction in complex networks: A survey. Physica A: statistical mechanics and its applications, 390(6):1150–1170, 2011.
  145. Care: Modeling interacting dynamics under temporal environmental variation. In Thirty-seventh Conference on Neural Information Processing Systems, 2023.
  146. Hope: High-order graph ode for modeling interacting dynamics. In International Conference on Machine Learning, pages 23124–23139. PMLR, 2023.
  147. An autoregressive flow model for 3d molecular geometry generation from scratch. In International Conference on Learning Representations (ICLR), 2022.
  148. Learning low-rank latent mesoscale structures in networks. Nature Communications, 15(1):224, 2024.
  149. Single-cell biological network inference using a heterogeneous graph transformer. Nature Communications, 14(1):964, 2023.
  150. Spontaneous recovery in dynamical networks. Nature Physics, 10(1):34–38, 2014.
  151. Learning heuristics over large graphs via deep reinforcement learning. arXiv preprint arXiv:1903.03332, 2019.
  152. Detecting vulnerable nodes in urban infrastructure interdependent network. In Proceedings of the 29th ACM SIGKDD Conference on Knowledge Discovery and Data Mining, pages 4617–4627, 2023.
  153. Spectre: Spectral conditioning helps to overcome the expressivity limits of one-shot graph generators. In International Conference on Machine Learning, pages 15159–15179. PMLR, 2022.
  154. Adaptive dynamical networks. Physics-Uspekhi, 60(7):694, 2017.
  155. Modelling and forecasting the diffusion of innovation–a 25-year review. International Journal of forecasting, 22(3):519–545, 2006.
  156. Controlling graph dynamics with reinforcement learning and graph neural networks. In International Conference on Machine Learning, pages 7565–7577. PMLR, 2021.
  157. Scaling deep learning for materials discovery. Nature, pages 1–6, 2023.
  158. Disruption of ecological networks in lakes by climate change and nutrient fluctuations. Nature Climate Change, 13(4):389–396, 2023.
  159. Distributed representations of words and phrases and their compositionality. Advances in neural information processing systems, 26, 2013.
  160. Network motifs: simple building blocks of complex networks. Science, 298(5594):824–827, 2002.
  161. Playing atari with deep reinforcement learning. arXiv preprint arXiv:1312.5602, 2013.
  162. Human-level control through deep reinforcement learning. nature, 518(7540):529–533, 2015.
  163. Scalable training of artificial neural networks with adaptive sparse connectivity inspired by network science. Nature communications, 9(1):2383, 2018.
  164. Constraining nonlinear time series modeling with the metabolic theory of ecology. Proceedings of the National Academy of Sciences, 120(12):e2211758120, 2023.
  165. Scalable graph neural network-based framework for identifying critical nodes and links in complex networks. Neurocomputing, 468:211–221, 2022.
  166. Deep learning of contagion dynamics on complex networks. Nature Communications, 12(1):4720, 2021.
  167. MEJ Newman. Message passing methods on complex networks. Proceedings of the Royal Society A, 479(2270):20220774, 2023.
  168. Structured cerebellar connectivity supports resilient pattern separation. Nature, 613(7944):543–549, 2023.
  169. Permutation invariant graph generation via score-based generative modeling. In International Conference on Artificial Intelligence and Statistics, pages 4474–4484. PMLR, 2020.
  170. Predicting opinion dynamics via sociologically-informed neural networks. In Proceedings of the 28th ACM SIGKDD Conference on Knowledge Discovery and Data Mining, pages 1306–1316, 2022.
  171. The biogrid database: A comprehensive biomedical resource of curated protein, genetic, and chemical interactions. Protein Science, 30(1):187–200, 2021.
  172. Warming indirectly simplifies food webs through effects on apex predators. Nature Ecology & Evolution, pages 1–10, 2023.
  173. Costless metabolic secretions as drivers of interspecies interactions in microbial ecosystems. Nature communications, 10(1):103, 2019.
  174. Transfer graph neural networks for pandemic forecasting. In Proceedings of the AAAI Conference on Artificial Intelligence, volume 35, pages 4838–4845, 2021.
  175. Popularity versus similarity in growing networks. Nature, 489(7417):537–540, 2012.
  176. Generative agents: Interactive simulacra of human behavior. In Proceedings of the 36th Annual ACM Symposium on User Interface Software and Technology, pages 1–22, 2023.
  177. Origin of degree correlations in the internet and other networks. Physical Review E, 68(2):026112, 2003.
  178. Epidemic processes in complex networks. Reviews of modern physics, 87(3):925, 2015.
  179. Dynamical and correlation properties of the internet. Physical review letters, 87(25):258701, 2001.
  180. Reverse graph learning for graph neural network. IEEE transactions on neural networks and learning systems, 2022.
  181. Consistent predator-prey biomass scaling in complex food webs. Nature Communications, 13(1):4990, 2022.
  182. Deepwalk: Online learning of social representations. In Proceedings of the 20th ACM SIGKDD international conference on Knowledge discovery and data mining, pages 701–710, 2014.
  183. Effective higher-order link prediction and reconstruction from simplicial complex embeddings. In Learning on Graphs Conference, pages 55–1. PMLR, 2022.
  184. Human–ai adaptive dynamics drives the emergence of information cocoons. Nature Machine Intelligence, pages 1–11, 2023.
  185. Openalex: A fully-open index of scholarly works, authors, venues, institutions, and concepts, 2022.
  186. Deepdrug3d: classification of ligand-binding pockets in proteins with a convolutional neural network. PLoS computational biology, 15(2):e1006718, 2019.
  187. Netsmf: Large-scale network embedding as sparse matrix factorization. In The World Wide Web Conference, pages 1509–1520, 2019.
  188. Network embedding as matrix factorization: Unifying deepwalk, line, pte, and node2vec. In Proceedings of the eleventh ACM international conference on web search and data mining, pages 459–467, 2018.
  189. Deepinf: Social influence prediction with deep learning. In Proceedings of the 24th ACM SIGKDD international conference on knowledge discovery & data mining, pages 2110–2119, 2018.
  190. Protein–ligand scoring with convolutional neural networks. Journal of chemical information and modeling, 57(4):942–957, 2017.
  191. Physics-informed neural networks: A deep learning framework for solving forward and inverse problems involving nonlinear partial differential equations. Journal of Computational physics, 378:686–707, 2019.
  192. Modeling the ecology and evolution of biodiversity: Biogeographical cradles, museums, and graves. Science, 361(6399):eaar5452, 2018.
  193. Strength of species interactions determines biodiversity and stability in microbial communities. Nature ecology & evolution, 4(3):376–383, 2020.
  194. Structure-oriented prediction in complex networks. Physics Reports, 750:1–51, 2018.
  195. Mathematical discoveries from program search with large language models. Nature, pages 1–3, 2023.
  196. An interdisciplinary survey on origin-destination flows modeling: Theory and techniques. arXiv preprint arXiv:2306.10048, 2023.
  197. Complexity-aware large scale origin-destination network generation via diffusion model. arXiv preprint arXiv:2306.04873, 2023.
  198. Predicting transcriptional outcomes of novel multigene perturbations with gears. Nature Biotechnology, pages 1–9, 2023.
  199. Universal scaling of robustness of ecosystem services to species loss. Nature communications, 12(1):5167, 2021.
  200. A structural graph representation learning framework. In Proceedings of the 13th international conference on web search and data mining, pages 483–491, 2020.
  201. Estimating the tolerance of species to the effects of global environmental change. Nature communications, 4(1):2350, 2013.
  202. SafeGraph. Social distancing metrics. https://docs.safegraph.com/edit/social-distancing-metrics, 2023.
  203. Learning to simulate complex physics with graph networks. In International conference on machine learning, pages 8459–8468. PMLR, 2020.
  204. Reviving a failed network through microscopic interventions. Nature Physics, 18(3):338–349, 2022.
  205. Link recommendation algorithms and dynamics of polarization in online social networks. Proceedings of the National Academy of Sciences, 118(50):e2102141118, 2021.
  206. Protein model accuracy estimation based on local structure quality assessment using 3d convolutional neural network. PloS one, 14(9):e0221347, 2019.
  207. E (n) equivariant graph neural networks. In International conference on machine learning, pages 9323–9332. PMLR, 2021.
  208. Structure and performance of fully connected neural networks: Emerging complex network properties. Physica A: Statistical Mechanics and its Applications, 615:128585, 2023.
  209. Combinatorial optimization with physics-inspired graph neural networks. Nature Machine Intelligence, 4(4):367–377, 2022.
  210. Proximal policy optimization algorithms. arXiv preprint arXiv:1707.06347, 2017.
  211. Generating simple directed social network graphs for information spreading. In Proceedings of the ACM Web Conference 2022, pages 1475–1485, 2022.
  212. Improved protein structure prediction using potentials from deep learning. Nature, 577(7792):706–710, 2020.
  213. Separation of scales and a thermodynamic description of feature learning in some cnns. Nature Communications, 14(1):908, 2023.
  214. Finding patient zero: Learning contagion source with graph neural networks. arXiv preprint arXiv:2006.11913, 2020.
  215. Learning gradient fields for molecular conformation generation. In International conference on machine learning, pages 9558–9568. PMLR, 2021.
  216. Learning symbolic models for graph-structured physical mechanism. In The Eleventh International Conference on Learning Representations, 2022.
  217. Modeling gene regulatory networks using neural network architectures. Nature Computational Science, 1(7):491–501, 2021.
  218. Fakenewsnet: A data repository with news content, social context, and spatiotemporal information for studying fake news on social media. Big data, 8(3):171–188, 2020.
  219. Combining physics and machine learning for network flow estimation. In International Conference on Learning Representations, 2021.
  220. A deep gravity model for mobility flows generation. Nature communications, 12(1):6576, 2021.
  221. Self-similarity of complex networks. Nature, 433(7024):392–395, 2005.
  222. Origins of fractality in the growth of complex networks. Nature physics, 2(4):275–281, 2006.
  223. Reconstruction methods for networks: The case of economic and financial systems. Physics reports, 757:1–47, 2018.
  224. Learning over families of sets-hypergraph representation learning for higher order tasks. In Proceedings of the 2021 SIAM International Conference on Data Mining (SDM), pages 756–764. SIAM, 2021.
  225. Optimal control of aging in complex networks. Proceedings of the National Academy of Sciences, 117(34):20404–20410, 2020.
  226. Interaction modeling with multiplex attention. Advances in Neural Information Processing Systems, 35:20038–20050, 2022.
  227. Revealing the predictability of intrinsic structure in complex networks. Nature communications, 11(1):574, 2020.
  228. The string database in 2021: customizable protein–protein networks, and functional characterization of user-uploaded gene/measurement sets. Nucleic acids research, 49(D1):D605–D612, 2021.
  229. The low-rank hypothesis of complex systems. Nature Physics, pages 1–9, 2024.
  230. Yuwei Du Wenzhen Huang Depeng Jin Tong Li, Haoqiang Liu and Yong Li. Gennet: A generative ai-powered synthetic data ecosystem for mobile networks. 2023.
  231. The why, how, and when of representations for complex systems. SIAM Review, 63(3):435–485, 2021.
  232. Geometric deep learning for online prediction of cascading failures in power grids. Reliability Engineering & System Safety, 237:109341, 2023.
  233. Attention is all you need. Advances in neural information processing systems, 30, 2017.
  234. Alexei Vázquez. Growing network with local rules: Preferential attachment, clustering hierarchy, and degree correlations. Physical Review E, 67(5):056104, 2003.
  235. Global protein function prediction from protein-protein interaction networks. Nature biotechnology, 21(6):697–700, 2003.
  236. Generic absorbing transition in coevolution dynamics. Physical review letters, 100(10):108702, 2008.
  237. Graph attention networks. arXiv preprint arXiv:1710.10903, 2017.
  238. Digress: Discrete denoising diffusion for graph generation. arXiv preprint arXiv:2209.14734, 2022.
  239. Multiscale simulations of complex systems by learning their effective dynamics. Nature Machine Intelligence, 4(4):359–366, 2022.
  240. Multi-objective model-based reinforcement learning for infectious disease control. In Proceedings of the 27th ACM SIGKDD Conference on Knowledge Discovery & Data Mining, pages 1634–1644, 2021.
  241. Deep-learning-enabled protein–protein interaction analysis for prediction of sars-cov-2 infectivity and variant evolution. Nature Medicine, 29(8):2007–2018, 2023.
  242. Scientific discovery in the age of artificial intelligence. Nature, 620(7972):47–60, 2023.
  243. An invertible graph diffusion neural network for source localization. In Proceedings of the ACM Web Conference 2022, pages 1058–1069, 2022.
  244. Causalgnn: Causal-based graph neural networks for spatio-temporal epidemic forecasting. In Proceedings of the AAAI conference on artificial intelligence, volume 36, pages 12191–12199, 2022.
  245. Towards one-shot neural combinatorial solvers: Theoretical and empirical notes on the cardinality-constrained case. In The Eleventh International Conference on Learning Representations, 2022.
  246. Deep generative model for periodic graphs. Advances in Neural Information Processing Systems, 35, 2022.
  247. Coevolution spreading in complex networks. Physics Reports, 820:1–51, 2019.
  248. Neural common neighbor with completion for link prediction. arXiv preprint arXiv:2302.00890, 2023.
  249. Identifying keystone species in microbial communities using deep learning. Nature Ecology & Evolution, 8(1):22–31, 2024.
  250. Casseqgcn: Combining network structure and temporal sequence to predict information cascades. Expert Systems with Applications, 206:117693, 2022.
  251. Duncan J Watts. A simple model of global cascades on random networks. Proceedings of the National Academy of Sciences, 99(9):5766–5771, 2002.
  252. Collective dynamics of ‘small-world’networks. nature, 393(6684):440–442, 1998.
  253. Emergent abilities of large language models. arXiv preprint arXiv:2206.07682, 2022.
  254. Trend: Temporal event and node dynamics for graph representation learning. In Proceedings of the ACM Web Conference 2022, pages 1159–1169, 2022.
  255. Decor: Degree-corrected social graph refinement for fake news detection. In Proceedings of the 29th ACM SIGKDD Conference on Knowledge Discovery and Data Mining, KDD ’23, page 2582–2593, New York, NY, USA, 2023. Association for Computing Machinery.
  256. Recovering dynamic networks in big static datasets. Physics Reports, 912:1–57, 2021.
  257. A quest for structure: Jointly learning the graph structure and semi-supervised classification. In Proceedings of the 27th ACM international conference on information and knowledge management, pages 87–96, 2018.
  258. Inductive graph neural networks for spatiotemporal kriging. In Proceedings of the AAAI Conference on Artificial Intelligence, volume 35, pages 4478–4485, 2021.
  259. A comprehensive survey on graph neural networks. IEEE transactions on neural networks and learning systems, 32(1):4–24, 2020.
  260. Detecting and modelling real percolation and phase transitions of information on social media. Nature Human Behaviour, 5(9):1161–1168, 2021.
  261. Exploring randomly wired neural networks for image recognition. In Proceedings of the IEEE/CVF International Conference on Computer Vision, pages 1284–1293, 2019.
  262. Relation-aware graph convolutional networks for agent-initiated social e-commerce recommendation. In Proceedings of the 28th ACM International Conference on Information and Knowledge Management, pages 529–538, 2019.
  263. Resiliency of mutualistic supplier-manufacturer networks. Scientific reports, 9(1):13559, 2019.
  264. Artificial intelligence: A powerful paradigm for scientific research. The Innovation, 2(4), 2021.
  265. Hypergcn: A new method for training graph convolutional networks on hypergraphs. Advances in neural information processing systems, 32, 2019.
  266. Learning for graph matching and related combinatorial optimization problems. In Proceedings of the Twenty-Ninth International Joint Conference on Artificial Intelligence, IJCAI-20, pages 4988–4996. International Joint Conferences on Artificial Intelligence Organization, 2020.
  267. Diffusion model for graph inverse problems: Towards effective source localization on complex networks. In Thirty-seventh Conference on Neural Information Processing Systems, 2023.
  268. Full-scale information diffusion prediction with reinforced recurrent networks. IEEE Transactions on Neural Networks and Learning Systems, 2021.
  269. Topology optimization based graph convolutional network. In IJCAI, pages 4054–4061, 2019.
  270. Stochastic gradient descent introduces an effective landscape-dependent regularization favoring flat solutions. Physical Review Letters, 130(23):237101, 2023.
  271. Learning interacting dynamical systems with latent gaussian process odes. Advances in Neural Information Processing Systems, 35:9188–9200, 2022.
  272. Graph structure of neural networks. In International Conference on Machine Learning, pages 10881–10891. PMLR, 2020.
  273. Graphrnn: Generating realistic graphs with deep auto-regressive models. In International conference on machine learning, pages 5708–5717. PMLR, 2018.
  274. Reconstruction of plant–pollinator networks from observational data. Nature Communications, 12(1):3911, 2021.
  275. Molecular representation learning via heterogeneous motif graph neural networks. In International Conference on Machine Learning, pages 25581–25594. PMLR, 2022.
  276. Agentformer: Agent-aware transformers for socio-temporal multi-agent forecasting. In Proceedings of the IEEE/CVF International Conference on Computer Vision, pages 9813–9823, 2021.
  277. Neural dynamics on complex networks. In Proceedings of the 26th ACM SIGKDD international conference on knowledge discovery & data mining, pages 892–902, 2020.
  278. Combining complex networks and data mining: why and how. Physics Reports, 635:1–44, 2016.
  279. Oag: Toward linking large-scale heterogeneous entity graphs. In Proceedings of the 25th ACM SIGKDD international conference on knowledge discovery & data mining, pages 2585–2595, 2019.
  280. An attentional multi-scale co-evolving model for dynamic link prediction. In Proceedings of the ACM Web Conference 2023, pages 429–437, 2023.
  281. Estimating comparable distances to tipping points across mutualistic systems by scaled recovery rates. Nature Ecology & Evolution, 6(10):1524–1536, 2022.
  282. A survey for solving mixed integer programming via machine learning. Neurocomputing, 519:205–217, 2023.
  283. Dismantling complex networks by a neural model trained from tiny networks. In Proceedings of the 31st ACM International Conference on Information & Knowledge Management, pages 2559–2568, 2022.
  284. Deep potential molecular dynamics: a scalable model with the accuracy of quantum mechanics. Physical review letters, 120(14):143001, 2018.
  285. Weisfeiler-lehman neural machine for link prediction. In Proceedings of the 23rd ACM SIGKDD international conference on knowledge discovery and data mining, pages 575–583, 2017.
  286. Link prediction based on graph neural networks. Advances in neural information processing systems, 31, 2018.
  287. Deep transfer learning for city-scale cellular traffic generation through urban knowledge graph. In Proceedings of the 29th ACM SIGKDD Conference on Knowledge Discovery and Data Mining, pages 4842–4851, 2023.
  288. Assessing the role of network topology in transportation network resilience. Journal of transport geography, 46:35–45, 2015.
  289. Dynamic graph neural networks under spatio-temporal distribution shift. Advances in Neural Information Processing Systems, 35:6074–6089, 2022.
  290. Social network dynamics of face-to-face interactions. Physical review E, 83(5):056109, 2011.
  291. Relationships of temperature and biodiversity with stability of natural aquatic food webs. Nature Communications, 14(1):3507, 2023.
  292. A novel higher-order neural network framework based on motifs attention for identifying critical nodes. Physica A: Statistical Mechanics and its Applications, 629:129194, 2023.
  293. Co-evolution of social and affiliation networks. In Proceedings of the 15th ACM SIGKDD international conference on Knowledge discovery and data mining, pages 1007–1016, 2009.
  294. Towards predicting equilibrium distributions for molecular systems with deep learning. arXiv preprint arXiv:2306.05445, 2023.
  295. Spatial planning of urban communities via deep reinforcement learning. Nature Computational Science, pages 1–15, 2023.
  296. Road planning for slums via deep reinforcement learning. KDD ’23, page 5695–5706, New York, NY, USA, 2023. Association for Computing Machinery.
  297. Yanxin Xi Yan Luo Tong Xia Yong Li Zhenyu Han, Xin Zhang. Gui: A comprehensive dataset of global urban infrastructure based on geospatial visual foundation models. 2023.
  298. Facilitating graph neural networks with random walk on simplicial complexes. In Thirty-seventh Conference on Neural Information Processing Systems, 2023.
  299. A data-driven graph generative model for temporal interaction networks. In Proceedings of the 26th ACM SIGKDD International Conference on Knowledge Discovery & Data Mining, pages 401–411, 2020.
  300. Plant–pollinator network change across a century in the subarctic. Nature Ecology & Evolution, 7(1):102–112, 2023.
  301. Quenching, aging, and reviving in coupled dynamical networks. Physics Reports, 931:1–72, 2021.
User Edit Pencil Streamline Icon: https://streamlinehq.com
Authors (11)
  1. Jingtao Ding (50 papers)
  2. Chang Liu (867 papers)
  3. Yu Zheng (198 papers)
  4. Yunke Zhang (18 papers)
  5. Zihan Yu (10 papers)
  6. Ruikun Li (11 papers)
  7. Hongyi Chen (23 papers)
  8. Jinghua Piao (12 papers)
  9. Huandong Wang (35 papers)
  10. Jiazhen Liu (21 papers)
  11. Yong Li (630 papers)
Citations (6)

Summary

  • The paper introduces AI-driven methodologies like graph neural networks and deep generative models to address high-dimensional challenges in network science.
  • It presents a novel taxonomy that categorizes key research problems, bridging theoretical insights with practical applications.
  • The survey highlights future directions where AI not only enhances network modeling but also inspires the formulation of new, interpretable scientific hypotheses.

Harnessing AI in Complex Network Science: A Comprehensive Survey

Introduction to Integrating AI with Complex Networks

Complex networks serve as abstract representations of various real-world systems, encompassing everything from biological ecosystems to intricate human interactions. Despite significant strides in understanding their statistical mechanics, structures, and dynamics, challenges persist in unraveling more realistic systems and enhancing practical applications. The advent of AI technologies, combined with an abundance of network data, ushers in a transformative era for complex network research. This comprehensive survey explores the fusion of AI with complex network science, detailing potential advantages, pivotal research issues, methodologies, and applications. Through this synthesis, we aim to spark further research and progress within this interdisciplinary domain.

Challenges in Complex Network Research

Addressing the intricate dynamics of complex networks presents substantial challenges. These include characterizing higher-order topological properties, elucidating the dynamic mechanisms within networks, modeling the coevolution of node states and their interactions, and optimizing high-dimensional networks. Traditional approaches often fall short due to simplified assumptions or prohibitive computational costs.

AI as a Solution

AI technology, especially deep learning methods, offers new vistas for complex network research. By adeptly managing high-dimensional data and enabling efficient inference without stringent assumptions, AI holds promise for overcoming existing hurdles. Specific AI methodologies such as graph embedding, graph neural networks, dynamic graph learning, and deep generative models showcase significant potential in tackling unresolved issues in complex network science.

Methodological Innovations

The survey introduces a novel taxonomy of research problems in complex network science, discussing the development of AI methodologies in representation, prediction, simulation, inference, generation, and control of complex networks. It underscores AI-enhanced complex network models' practical applications across domains like ecology and biology to urban and social networks, summarizing dataset resources essential for accelerating data-centric studies.

Future Directions

As complex network science progresses, the interplay between theoretical underpinnings and AI-driven approaches becomes crucial. Combining AI with mechanistic models could yield more interpretable, generalized solutions. Conversely, the principles of complex networks could inform the development of more sophisticated AI models, particularly in understanding and designing LLMs and other emergent AI systems. The survey speculates on the transformative capability of AI in discovering new network science theories, emphasizing the need for generating scientifically viable hypotheses.

Integrating AI for Network Science Discovery

In an era brimming with data and computational tools, integrating AI within complex network research opens up unprecedented opportunities for discovery and application. By addressing current limitations and exploring novel AI methodologies, future research can untangle the complexities of real-world networks, contributing to a deeper understanding and potentially revolutionary advances across multiple fields.

Conclusion

This survey not only charts the prescient collaboration between AI and complex network science but also inspires continued exploration into their confluence. It paints a picture of an evolving landscape where AI not merely aids in the analysis of complex networks but becomes instrumental in forging new pathways for understanding and manipulating the fabric of interconnected systems.