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Quantifying cell cycle regulation by tissue crowding (2401.08805v3)

Published 16 Jan 2024 in q-bio.QM and physics.bio-ph

Abstract: The spatiotemporal coordination and regulation of cell proliferation is fundamental in many aspects of development and tissue maintenance. Cells have the ability to adapt their division rates in response to mechanical constraints, yet we do not fully understand how cell proliferation regulation impacts cell migration phenomena. Here, we present a minimal continuum model of cell migration with cell cycle dynamics, which includes density-dependent effects and hence can account for cell proliferation regulation. By combining minimal mathematical modelling, Bayesian inference, and recent experimental data, we quantify the impact of tissue crowding across different cell cycle stages in epithelial tissue expansion experiments. Our model suggests that cells sense local density and adapt cell cycle progression in response, during G1 and the combined S/G2/M phases, providing an explicit relationship between each cell cycle stage duration and local tissue density, which is consistent with several experimental observations. Finally, we compare our mathematical model predictions to different experiments studying cell cycle regulation and present a quantitative analysis on the impact of density-dependent regulation on cell migration patterns. Our work presents a systematic approach for investigating and analysing cell cycle data, providing mechanistic insights into how individual cells regulate proliferation, based on population-based experimental measurements.

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References (45)
  1. P. Jorgensen and M. Tyers. How cells coordinate growth and division. Current Biology, 14(23):R1014–R1027, 2004.
  2. Spatial constraints control cell proliferation in tissues. Proceedings of the National Academy of Sciences, 111(15):5586–5591, 2014.
  3. J. Massagué. G1 cell-cycle control and cancer. Nature, 432(7015):298–306, 2004.
  4. Contact inhibition (of proliferation) redux. Current Opinion in Cell Biology, 24(5):685–694, 2012.
  5. T. Otto and P. Sicinski. Cell cycle proteins as promising targets in cancer therapy. Nature Reviews Cancer, 17(2):93–115, 2017.
  6. V. K. Gupta and O. Chaudhuri. Mechanical regulation of cell-cycle progression and division. Trends in Cell Biology, 32(9):773–785, 2022.
  7. Mathematical models for cell migration with real-time cell cycle dynamics. Biophysical Journal, 114(5):1241–1253, 2018.
  8. Practical parameter identifiability for spatio-temporal models of cell invasion. Journal of the Royal Society Interface, 17(164):20200055, 2020.
  9. The invasion speed of cell migration models with realistic cell cycle time distributions. Journal of Theoretical Biology, 481:91–99, 2019.
  10. Visualizing spatiotemporal dynamics of multicellular cell-cycle progression. Cell, 132(3):487–498, 2008.
  11. Cycletrak: a novel system for the semi-automated analysis of cell cycle dynamics. Developmental Biology, 365(1):189–195, 2012.
  12. Fluorescent indicators for simultaneous reporting of all four cell cycle phases. Nature Methods, 13(12):993–996, 2016.
  13. Scratch-induced partial skin wounds re-epithelialize by sheets of independently migrating keratinocytes. Life Science Alliance, 4(1):e202000765, 2021.
  14. E-cadherin and lgn align epithelial cell divisions with tissue tension independently of cell shape. Proceedings of the National Academy of Sciences, 114(29):E5845–E5853, 2017.
  15. A. B. Pardee. G1 events and regulation of cell proliferation. Science, 246(4930):603–608, 1989.
  16. Cell division and tissue mechanics. Current Opinion in Cell Biology, 60:114–120, 2019.
  17. Nutrient restriction causes reversible G2 arrest in Xenopus neural progenitors. Development, 146(20):dev178871, 2019.
  18. A DNA-structured mathematical model of cell-cycle progression in cyclic hypoxia. Journal of Theoretical Biology, 545:111104, 2022.
  19. A mechanical G2 checkpoint controls epithelial cell division through E-cadherin-mediated regulation of Wee1-Cdk1. Cell Reports, 41(2):111475, 2022.
  20. Size-dependent patterns of cell proliferation and migration in freely-expanding epithelia. eLife, 9:e58945, 2020.
  21. E-cadherin biointerfaces reprogram collective cell migration and cell cycling by forcing homeostatic conditions. bioRxiv 2023.07.25.550505, 2023.
  22. Capturing the mechanosensitivity of cell proliferation in models of epithelium. bioRxiv 2023.01.31.526438, 2023.
  23. Examining go-or-grow using fluorescent cell-cycle indicators and cell-cycle-inhibiting drugs. Biophysical Journal, 118(6):1243–1247, 2020.
  24. Determination of parameter identifiability in nonlinear biophysical models: A Bayesian approach. The Journal of General Physiology, 143(3):401–416, 2014.
  25. Quantifying tissue growth, shape and collision via continuum models and Bayesian inference. Journal of the Royal Society Interface, 20(204):20230184, 2023.
  26. pyPESTO: a modular and scalable tool for parameter estimation for dynamic models. Bioinformatics, 39(11):btad711, 2023.
  27. J. LaChance and D. J. Cohen. Practical fluorescence reconstruction microscopy for large samples and low-magnification imaging. PLoS Computational Biology, 16(12):e1008443, 2020.
  28. Collective and single cell behavior in epithelial contact inhibition. Proceedings of the National Academy of Sciences, 109(3):739–744, 2012.
  29. Optimal quantification of contact inhibition in cell populations. Biophysical Journal, 113(9):1920–1924, 2017.
  30. Reproducibility of scratch assays is affected by the initial degree of confluence: Experiments, modelling and model selection. Journal of Theoretical Biology, 390:136–145, 2016.
  31. Logistic proliferation of cells in scratch assays is delayed. Bulletin of Mathematical Biology, 79(5):1028–1050, 2017.
  32. Structural identifiability analysis of age-structured PDE epidemic models. Journal of Mathematical Biology, 84(1):1–30, 2022.
  33. Structural identifiability analysis of linear reaction-advection-diffusion processes in mathematical biology. arXiv preprint arXiv:2309.15326, 2023.
  34. Autocorrelated measurement processes and inference for ordinary differential equation models of biological systems. Journal of the Royal Society Interface, 20(199):20220725, 2023.
  35. Modelling count data with partial differential equation models in biology. bioRxiv 2023.09.09.556963, 2023.
  36. Environmental stress level to model tumor cell growth and survival. Mathematical Biosciences and Engineering, 19(6):5509–5545, 2022.
  37. Using systemic modeling and Bayesian calibration to investigate the role of the tumor microenvironment on chemoresistance. arXiv preprint arXiv:2310.19688, 2023.
  38. A stochastic mathematical model of 4d tumour spheroids with real-time fluorescent cell cycle labelling. Journal of the Royal Society Interface, 19(189):20210903, 2022.
  39. Impact of variability in cell cycle periodicity on cell population dynamics. PLOS Computational Biology, 19(6):e1011080, 2023.
  40. Self-assembly of tessellated tissue sheets by expansion and collision. Nature Communications, 13(1):1–10, 2022.
  41. J. Smith and L. Martin. Do cells cycle? Proceedings of the National Academy of Sciences, 70(4):1263–1267, 1973.
  42. Quantifying the length and variance of the eukaryotic cell cycle phases by a stochastic model and dual nucleoside pulse labelling. PLoS Computational Biology, 10(7):e1003616, 2014.
  43. A multi-stage representation of cell proliferation as a Markov process. Bulletin of Mathematical Biology, 79:2905–2928, 2017.
  44. Equivalence framework for an age-structured multistage representation of the cell cycle. Physical Review E, 105(6):064411, 2022.
  45. Parameter identifiability and model selection for partial differential equation models of cell invasion. arXiv preprint arXiv:2309.01476, 2023.
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