Multi-scale Local Network Structure Critically Impacts Epidemic Spread and Interventions (2312.17351v1)
Abstract: Network epidemic simulation holds the promise of enabling fine-grained understanding of epidemic behavior, beyond that which is possible with coarse-grained compartmental models. Key inputs to these epidemic simulations are the networks themselves. However, empirical measurements and samples of realistic interaction networks typically display properties that are challenging to capture with popular synthetic models of networks. Our empirical results show that epidemic spread behavior is very sensitive to a subtle but ubiquitous form of multi-scale local structure that is not present in common baseline models, including (but not limited to) uniform random graph models (Erdos-Renyi), random configuration models (Chung-Lu), etc. Such structure is not necessary to reproduce very simple network statistics, such as degree distributions or triangle closing probabilities. However, we show that this multi-scale local structure impacts, critically, the behavior of more complex network properties, in particular the effect of interventions such as quarantining; and it enables epidemic spread to be halted in realistic interaction networks, even when it cannot be halted in simple synthetic models. Key insights from our analysis include how epidemics on networks with widespread multi-scale local structure are easier to mitigate, as well as characterizing which nodes are ultimately not likely to be infected. We demonstrate that this structure results from more than just local triangle structure in the network, and we illustrate processes based on homophily or social influence and random walks that suggest how this multi-scale local structure arises.
- Tree-like structure in large social and information networks. In Proc. of the 2013 IEEE ICDM, pages 1–10, 2013.
- Tree decompositions and social graphs. Internet Mathematics, 12(5):315–361, 2016.
- Comparing large-scale computational approaches to epidemic modeling: agent-based versus structured metapopulation models. BMC infectious diseases, 10(1):1–13, 2010.
- The role of directionality, heterogeneity and correlations in epidemic risk and spread. arXiv preprint arXiv:2005.11283, 2020.
- Linda JS Allen. A primer on stochastic epidemic models: Formulation, numerical simulation, and analysis. Infectious Disease Modelling, 2(2):128–142, 2017.
- Local graph partitioning using pagerank vectors. In 2006 47th Annual IEEE Symposium on Foundations of Computer Science (FOCS’06), pages 475–486. IEEE, 2006.
- Metapopulation epidemic models with heterogeneous mixing and travel behaviour. Theoretical Biology and Medical Modelling, 11:1–26, 2014.
- Multiscale mobility networks and the spatial spreading of infectious diseases. Proceedings of the national academy of sciences, 106(51):21484–21489, 2009.
- Emergence of scaling in random networks. Science, 286(5439):509–512, October 1999.
- Sis epidemic propagation on hypergraphs. Bulletin of mathematical biology, 78:713–735, 2016.
- Layered label propagation: A multiresolution coordinate-free ordering for compressing social networks. In Proceedings of the 20th WWW2011, pages 587–596, March 2011.
- Models of core/periphery structures. Social networks, 21(4):375–395, 2000.
- Agent-based models in empirical social research. Sociological methods & research, 44(2):186–221, 2015.
- Optimal safety-critical control of epidemics. IEEE Control Systems Letters, 2023.
- Epidemic thresholds in real networks. ACM Transactions on Information and System Security (TISSEC), 10(4):1–26, 2008.
- Mobility network models of covid-19 explain inequities and inform reopening. Nature, 589(7840):82–87, 2021.
- Node immunization on large graphs: Theory and algorithms. IEEE Transactions on Knowledge and Data Engineering, 28(1):113–126, 2015.
- Friendship and mobility: user movement in location-based social networks. In Proceedings of the 17th ACM SIGKDD international conference on Knowledge discovery and data mining, pages 1082–1090, 2011.
- Connected components in random graphs with given expected degree sequences. Annals of combinatorics, 6(2):125–145, 2002.
- Efficient immunization strategies for computer networks and populations. Physical review letters, 91(24):247901, 2003.
- Characterization of complex networks: A survey of measurements. Advances in Physics, 56(1):167–242, January 2007.
- Localization on low-order eigenvectors of data matrices. arXiv preprint arXiv:1109.1355, 2011.
- The net reproductive value and stability in matrix population models. Natural Resource Modeling, 8(4):297–333, 1994.
- An economic geography of the united states: From commutes to megaregions. PLoS ONE, 11:e0166083, 2016.
- The contact network of mexico city. arXiv preprint arXiv:2007.14596, 2020.
- Morris H. Degroot. Reaching a consensus. Journal of the American Statistical Association, 69(345):118–121, March 1974.
- Long ties accelerate noisy threshold-based contagions. arXiv preprint arXiv:1810.03579, 2018.
- Optimal patching in clustered malware epidemics. IEEE/ACM Transactions on Networking, 24(1):283–298, 2014.
- Flow-based algorithms for improving clusters: A unifying framework, software, and performance. SIAM Review, 65(1):59–143, February 2023.
- Graph vulnerability and robustness: A survey. IEEE Transactions on Knowledge and Data Engineering, 2022.
- Overview of the 2003 kdd cup. Acm Sigkdd Explorations Newsletter, 5(2):149–151, 2003.
- Immunization of networks with non-overlapping community structure. Social Network Analysis and Mining, 9:1–22, 2019.
- Seeded pagerank solution paths. European Journal of Applied Mathematics, 27(6):812–845, 2016.
- David F. Gleich and C. Seshadhri. Vertex neighborhoods, low conductance cuts, and good seeds for local community methods. In KDD2012, pages 597–605, August 2012.
- Beyond the flow decomposition barrier. Journal of the ACM (JACM), 45(5):783–797, 1998.
- Localization and spreading of diseases in complex networks. Physical review letters, 109(12):128702, 2012.
- An efficient immunization strategy for community networks. PloS one, 8(12):e83489, 2013.
- Community lockdowns in social networks hardly mitigate epidemic spreading. New Journal of Physics, 23(4):043039, 2021.
- Ranking the risk of animal-to-human spillover for newly discovered viruses. Proceedings of the National Academy of Sciences, 118(15):e2002324118, 2021.
- Mark S Granovetter. The strength of weak ties. American journal of sociology, 78(6):1360–1380, 1973.
- Epidemic spreading and control strategies in spatial modular network. Applied network science, 5(1):1–14, 2020.
- Heterogeneity matters: Contact structure and individual variation shape epidemic dynamics. Plos one, 16(7):e0250050, 2021.
- Centrality measures for networks with community structure. Physica A: Statistical Mechanics and its Applications, 452:46–59, 2016.
- Exploring network structure, dynamics, and function using networkx. Technical report, Los Alamos National Lab.(LANL), Los Alamos, NM (United States), 2008.
- Global efficiency of local immunization on complex networks. Scientific reports, 3(1):2171, 2013.
- Beyond r 0: heterogeneity in secondary infections and probabilistic epidemic forecasting. Journal of the Royal Society Interface, 17(172):20200393, 2020.
- Epidemics on hypergraphs: Spectral thresholds for extinction. Proceedings of the Royal Society A, 477(2252):20210232, 2021.
- A closed-loop framework for inference, prediction, and control of sir epidemics on networks. IEEE Transactions on Network Science and Engineering, 8(3):2262–2278, 2021.
- Theoretical bounds on the network community profile from low-rank semi-definite programming. arXiv, cs.SI:2303.14550, 2023.
- A comparison of agent-based models and equation based models for infectious disease epidemiology. In AICS, pages 33–44, 2018.
- Simplicial models of social contagion. Nature communications, 10(1):2485, 2019.
- Think locally, act locally: Detection of small, medium-sized, and large communities in large networks. Physical Review E, 91(1):012821, 2015.
- Multiscale dynamic human mobility flow dataset in the u.s. during the covid-19 epidemic. Scientific Data, pages 1–13, 2020.
- Individual identity and movement networks for disease metapopulations. Proceedings of the national academy of sciences, 107(19):8866–8870, 2010.
- Networks and epidemic models. Journal of the royal society interface, 2(4):295–307, 2005.
- A contribution to the mathematical theory of epidemics. Proceedings of the royal society of london. Series A, Containing papers of a mathematical and physical character, 115(772):700–721, 1927.
- Mathematics of epidemics on networks. Cham: Springer, 598:31, 2017.
- Introducing the enron corpus. In CEAS, volume 45, pages 92–96, 2004.
- An efficient immunization strategy using overlapping nodes and its neighborhoods. In Companion Proceedings of the The Web Conference 2018, pages 1269–1275, 2018.
- Benchmark graphs for testing community detection algorithms. Physical review E, 78(4):046110, 2008.
- Analytic models for sir disease spread on random spatial networks. Journal of Complex Networks, 6(6):948–970, 2018.
- Impact of covid-19 epidemics on bed requirements in a healthcare center using data-driven discrete-event simulation. In 2020 Winter Simulation Conference (WSC), pages 771–781. IEEE, 2020.
- Graphs over time: densification laws, shrinking diameters and possible explanations. In Proceedings of the eleventh ACM SIGKDD international conference on Knowledge discovery in data mining, pages 177–187, 2005.
- Graph evolution: Densification and shrinking diameters. ACM transactions on Knowledge Discovery from Data (TKDD), 1(1):2–es, 2007.
- SNAP Datasets: Stanford large network dataset collection. http://snap.stanford.edu/data, June 2014.
- Community structure in large networks: Natural cluster sizes and the absence of large well-defined clusters. Internet Mathematics, 6(1):29–123, 2009.
- Measurability of the epidemic reproduction number in data-driven contact networks. Proceedings of the National Academy of Sciences, 115(50):12680–12685, 2018.
- Community size effects on epidemic spreading in multiplex social networks. PloS one, 11(3):e0152021, 2016.
- Stochastic optimal control of epidemic processes in networks. arXiv preprint arXiv:1810.13043, 2018.
- Effective resistance against pandemics: Mobility network sparsification for high-fidelity epidemic simulations. PLOS Computational Biology, 18(11):e1010650, 2022.
- Efficient generation of networks with given expected degrees. In International Workshop on Algorithms and Models for the Web-Graph, pages 115–126. Springer, 2011.
- The role of community mixing styles in shaping epidemic behaviors in weighted networks. PloS one, 8(2):e57100, 2013.
- Measurement and analysis of online social networks. In Proceedings of the 7th ACM SIGCOMM Conference on Internet Measurement, IMC ’07, pages 29–42, New York, NY, USA, 2007. ACM.
- Individual non-pharmaceutical intervention strategies for stochastic networked epidemics. In 2022 IEEE 61st Conference on Decision and Control (CDC), pages 5627–5632. IEEE, 2022.
- An agent-based distributed control policy for networked sir epidemics. arXiv preprint arXiv:2209.06250, 2022.
- Analysis and control of epidemics: A survey of spreading processes on complex networks. IEEE Control Systems Magazine, 36(1):26–46, 2016.
- Structure and tie strengths in mobile communication networks. Proceedings of the national academy of sciences, 104(18):7332–7336, 2007.
- Distinct types of eigenvector localization in networks. Scientific reports, 6(1):18847, 2016.
- Eigenvector localization in real networks and its implications for epidemic spreading. Journal of Statistical Physics, 173(3-4):1110–1123, 2018.
- Threshold conditions for arbitrary cascade models on arbitrary networks. Knowledge and information systems, 33:549–575, 2012.
- Optimal resource allocation for network protection: A geometric programming approach. IEEE Transactions on Control of Network Systems, 1(1):99–108, 2014.
- Derek De Solla Price. A general theory of bibliometric and other cumulative advantage processes. Journal of the American Society for Information Science, 27(5):292–306, 1976.
- Trust management for the semantic web. In The Semantic Web-ISWC 2003: Second International Semantic Web Conference, Sanibel Island, FL, USA, October 20-23, 2003. Proceedings 2, pages 351–368. Springer, 2003.
- Unraveling the disease consequences and mechanisms of modular structure in animal social networks. Proceedings of the National Academy of Sciences, 114(16):4165–4170, 2017.
- Approximation algorithms for reducing the spectral radius to control epidemic spread. In Proceedings of the 2015 SIAM International Conference on Data Mining, pages 568–576. SIAM, 2015.
- Dynamics and control of diseases in networks with community structure. PLoS computational biology, 6(4):e1000736, 2010.
- A strategy to assess spillover risk of bat sars-related coronaviruses in southeast asia. Nature communications, 13(1):4380, 2022.
- Dissecting localization phenomena of dynamical processes on networks. Journal of Physics: Complexity, 2(2):025011, 2021.
- Modeling communicable diseases, human mobility, and epidemics: a review. Annalen der Physik, 534(6):2100482, 2022.
- Epidemic spreading on complex networks with community structures. Scientific reports, 6(1):1–7, 2016.
- A local immunization strategy for networks with overlapping community structure. Physica A: Statistical Mechanics and its Applications, 467:148–156, 2017.
- Spatial heterogeneity can lead to substantial local variations in covid-19 timing and severity. Proceedings of the National Academy of Sciences, 117(39):24180–24187, 2020.
- On the vulnerability of large graphs. In 2010 IEEE International Conference on Data Mining, pages 1091–1096. IEEE, 2010.
- Social structure of facebook networks. Physica A: Statistical Mechanics and its Applications, 391(16):4165–4180, 2012.
- High-resolution agent-based modeling of covid-19 spreading in a small town. Advanced theory and simulations, 4(3):2000277, 2021.
- Learning resolution parameters for graph clustering. In The World Wide Web Conference, WWW ’19, pages 1909–1919, New York, NY, USA, 2019. ACM.
- Network structure-based interventions on spatial spread of epidemics in metapopulation networks. Physical Review E, 102(6):062306, 2020.
- Spatial epidemiology of networked metapopulation: An overview. Chinese Science Bulletin, 59:3511–3522, 2014.
- Collective dynamics of “small-world” networks. Nature, 393(6684):440–442, June 1998.
- User interactions in social networks and their implications. In Proceedings of the 4th ACM European conference on Computer systems, EuroSys ’09, pages 205–218, New York, NY, USA, 2009. ACM.
- The law of mass action in epidemiology. Proceedings of the National Academy of Sciences, 31(1):24–34, 1945.
- How local interactions impact the dynamics of an epidemic. Bulletin of Mathematical Biology, 83:1–14, 2021.
- The effects of local homogeneity assumptions in metapopulation models of infectious disease. Royal Society Open Science, 9(7):211919, 2022.
- An integrated framework for building trustworthy data-driven epidemiological models: Application to the covid-19 outbreak in new york city. PLoS computational biology, 17(9):e1009334, 2021.
- Omar Eldaghar (3 papers)
- Michael W. Mahoney (233 papers)
- David F. Gleich (65 papers)