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Stronger Graph Transformer with Regularized Attention Scores (2312.11730v4)

Published 18 Dec 2023 in cs.LG

Abstract: Graph Neural Networks are notorious for its memory consumption. A recent Transformer-based GNN called Graph Transformer is shown to obtain superior performances when long range dependencies exist. However, combining graph data and Transformer architecture led to a combinationally worse memory issue. We propose a novel version of "edge regularization technique" that alleviates the need for Positional Encoding and ultimately alleviate GT's out of memory issue. We observe that it is not clear whether having an edge regularization on top of positional encoding is helpful. However, it seems evident that applying our edge regularization technique indeed stably improves GT's performance compared to GT without Positional Encoding.

Summary

  • The paper introduces an edge regularization technique that improves the attention mechanism in Graph Transformers by caching scores and computing an additional loss during backpropagation.
  • The approach circumvents softmax limitations by applying a separate sigmoid function, thereby integrating graph structure more directly into training.
  • Results show that regularization boosts performance without positional encodings, although memory consumption issues persist for larger graphs.

Introduction to Graph Transformer Challenges

Graph Neural Networks (GNNs) have made notable advancements in the representation of graph-structured data, benefiting a vast range of applications. Traditional GNNs, such as Message Passing Neural Networks (MPNNs), excel in leveraging local graph structures but face issues when trying to capture longer-range dependencies. These issues are identified as oversquashing, where distant node information becomes diluted, and oversmoothing, where node features become too similar, resulting in a loss of expressiveness. An emerging solution to these challenges has been the adaptation of Transformer architectures, known for their capacity to handle long-range dependencies in tasks like natural language processing, into the field of graph data as Graph Transformers (GTs).

Bridging Transformer Efficiency and Graphs

Transformers offer promise for graphs by enabling more flexible global structure learning, yet they introduce their own set of problems. Chief among these is the substantial memory demand during training, a barrier for processing larger graphs. The loss of inherent graph structure also poses a problem, often remedied by positional encodings—but these encodings further exacerbate memory consumption. The paper argues for an "edge regularization technique" to potentially supplant positional encodings. This technique involves optimizing attention scores in GT models, incorporating graph structure information directly into the training process, while sidestepping some of the memory burdens of positional encodings.

Proposed Method: Edge Regularization

The proposed edge regularization technique is quite straightforward. It operates by caching attention scores during each GT layer's computation and then, at the backpropagation phase, computing an additional loss to guide the attention mechanism parameters. This method seems specifically designed to avoid disrupting the network's ability to learn useful node representations. Unlike earlier approaches using the softmax function, which constrains attention weights, a separate sigmoid function is applied to attention scores, circumventing such limitations. The paper illustrates this concept with algorithms and illustrates the potential impact on GT's computational efficiency.

Performance and Observations

Testing this regularization approach on datasets designed for GTs shows mixed results. While the regularization demonstrates improvement in performance when positional encodings are not used, combining them can sometimes lead to degraded outcomes. The paper also acknowledges the continued challenge of GT's memory consumption, hinting at the prospect of improved Transformer iterations or entirely fresh architectures to eventually resolve these limitations.

In summary, the research presents a promising direction for enhancing the efficiency of Graph Transformers by tweaking their attention mechanisms. The edge regularization technique could offer a path to leaner models capable of handling larger graphs—an essential step for advancing the state-of-the-art in GNN and GT applications.