Papers
Topics
Authors
Recent
Gemini 2.5 Flash
Gemini 2.5 Flash
143 tokens/sec
GPT-4o
7 tokens/sec
Gemini 2.5 Pro Pro
46 tokens/sec
o3 Pro
4 tokens/sec
GPT-4.1 Pro
38 tokens/sec
DeepSeek R1 via Azure Pro
28 tokens/sec
2000 character limit reached

Model selection focusing on longtime behavior of differential equations (2312.05128v1)

Published 8 Dec 2023 in math.NA, cs.NA, and q-bio.QM

Abstract: Modeling biological processes is a highly demanding task because not all processes are fully understood. Mathematical models allow us to test hypotheses about possible mechanisms of biological processes. The mathematical mechanisms oftentimes abstract from the biological micro-scale mechanisms. Experimental parameter calibration is extremely challenging as the connection between abstract and micro-scale mechanisms is unknown. Even if some microscopic parameters can be determined by isolated experiments, the connection to the abstract mathematical model is challenging. We present ideas for overcoming these difficulties by using longtime characteristics of solutions for, first, finding abstract mechanisms covering large-scale observations and, second, determining parameter values for the abstract mechanisms. The parameter values are not directly connected to experimental data but serve as a link between known mechanisms and observations. The framework combines machine learning techniques with the characteristic solution behavior of differential equations. This setting gives insight into challenges by using rare data only that can later be used for partial differential equations.

Definition Search Book Streamline Icon: https://streamlinehq.com
References (12)
  1. Integrating machine learning and multiscale modeling—perspectives, challenges, and opportunities in the biological, biomedical, and behavioral sciences. npj Digital Medicine 2, 1 (Nov. 2019), 115.
  2. Data-driven science and engineering: machine learning, dynamical systems, and control. Cambridge University Press, Cambridge New York, NY Port Melbourne New Delhi Singapore, 2019.
  3. Discovering governing equations from data by sparse identification of nonlinear dynamical systems. Proceedings of the National Academy of Sciences 113, 15 (Apr. 2016), 3932–3937.
  4. SciANN: A Keras/TensorFlow wrapper for scientific computations and physics-informed deep learning using artificial neural networks. Computer Methods in Applied Mechanics and Engineering 373 (Jan. 2021), 113552.
  5. Data-driven identification of 2D Partial Differential Equations using extracted physical features. Computer Methods in Applied Mechanics and Engineering 381 (Aug. 2021), 113831.
  6. Universal Differential Equations for Scientific Machine Learning, Nov. 2021. arXiv:2001.04385 [cs, math, q-bio, stat].
  7. Chemotactic effects in reaction-diffusion equations for inflammation. Journal of Biological Physics 45, 3 (Sept. 2019), 253–273.
  8. Modeling the Chronification Tendency of Liver Infections as Evolutionary Advantage. Bulletin of Mathematical Biology 81, 11 (Nov. 2019), 4743–4760.
  9. Automative model selection and model certification for reaction-diffusion equations. IFAC-PapersOnLine 55, 20 (2022), 73–78.
  10. Parameterization of mechanistic models from qualitative data using an efficient optimal scaling approach. Journal of Mathematical Biology 81, 2 (Aug. 2020), 603–623.
  11. Efficient gradient-based parameter estimation for dynamic models using qualitative data. Bioinformatics 37, 23 (Dec. 2021), 4493–4500.
  12. Experimental models of hepatitis B and C — new insights and progress. Nature Reviews Gastroenterology & Hepatology 13, 6 (June 2016), 362–374.
Citations (1)

Summary

We haven't generated a summary for this paper yet.