Papers
Topics
Authors
Recent
Gemini 2.5 Flash
Gemini 2.5 Flash
144 tokens/sec
GPT-4o
7 tokens/sec
Gemini 2.5 Pro Pro
45 tokens/sec
o3 Pro
4 tokens/sec
GPT-4.1 Pro
38 tokens/sec
DeepSeek R1 via Azure Pro
28 tokens/sec
2000 character limit reached

Deformable multi-modal image registration for the correlation between optical measurements and histology images (2311.14414v1)

Published 24 Nov 2023 in eess.IV and cs.CV

Abstract: The correlation of optical measurements with a correct pathology label is often hampered by imprecise registration caused by deformations in histology images. This study explores an automated multi-modal image registration technique utilizing deep learning principles to align snapshot breast specimen images with corresponding histology images. The input images, acquired through different modalities, present challenges due to variations in intensities and structural visibility, making linear assumptions inappropriate. An unsupervised and supervised learning approach, based on the VoxelMorph model, was explored, making use of a dataset with manually registered images used as ground truth. Evaluation metrics, including Dice scores and mutual information, reveal that the unsupervised model outperforms the supervised (and manual approach) significantly, achieving superior image alignment. This automated registration approach holds promise for improving the validation of optical technologies by minimizing human errors and inconsistencies associated with manual registration.

Definition Search Book Streamline Icon: https://streamlinehq.com
References (27)
  1. Towards the use of diffuse reflectance spectroscopy for real-time in vivo detection of breast cancer during surgery. Journal of Translational Medicine 2018 16:1, 16(1):1–14, 12 2018.
  2. Diffuse reflectance spectroscopy for accurate margin assessment in breast-conserving surgeries: importance of an optimal number of fibers. Biomedical Optics Express, 14(8), 2023.
  3. Mesoscopic fluorescence lifetime imaging: Fundamental principles, clinical applications and future directions HHS Public Access. J Biophotonics, 14(6):202000472, 2021.
  4. Discriminating healthy from tumor tissue in breast lumpectomy specimens using deep learning-based hyperspectral imaging. Biomedical Optics Express, 13(5):2581, 5 2022.
  5. Feasibility of ex vivo margin assessment with hyperspectral imaging during breast-conserving surgery: From imaging tissue slices to imaging lumpectomy specimen. Applied Sciences (Switzerland), 11(19), 2021.
  6. Challenges and opportunities in clinical translation of biomedical optical spectroscopy and imaging. https://doi.org/10.1117/1.JBO.23.3.030901, 23(3):030901, 3 2018.
  7. Validation of novel optical imaging technologies: the pathologists’ view. https://doi.org/10.1117/1.2795569, 12(5):051801, 9 2007.
  8. The effect of tissue fixation and processing on breast cancer size B,BB.
  9. Elizabeth Mcinnes. Artefacts in histopathology.
  10. Method for accurate registration of tissue autofluorescence imaging data with corresponding histology: a means for enhanced tumor margin assessment. Journal of Biomedical Optics, 23(1):1, 1 2018.
  11. Stained and infrared image registration as first step for cancer detection. 2014 IEEE-EMBS International Conference on Biomedical and Health Informatics, BHI 2014, pages 420–423, 2014.
  12. Deformable Registration of Histological Cancer Margins to Gross Hyperspectral Images using Demons. Proceedings of SPIE–the International Society for Optical Engineering, 10581:22, 3 2018.
  13. Hyperspectral Imaging for Cancer Surgical Margin Delineation: Registration of Hyperspectral and Histological Images NIH Public Access. 9036:90360, 2014.
  14. Automated detection of breast cancer in resected specimens with fluorescence lifetime imaging. Physics in Medicine and Biology, 63(1), 2018.
  15. Scatter spectroscopic imaging distinguishes between breast pathologies in tissues relevant to surgical margin assessment. Clinical Cancer Research, 18(22):6315–6325, 11 2012.
  16. Method for coregistration of optical measurements of breast tissue with histopathology: the importance of accounting for tissue deformations. https://doi.org/10.1117/1.JBO.24.7.075002, 24(7):075002, 7 2019.
  17. Challenges and Solutions in Multimodal Medical Image Subregion Detection and Registration. Journal of Medical Imaging and Radiation Sciences, 50(1):24–30, 3 2019.
  18. A Review of the Application of Multi-modal Deep Learning in Medicine: Bibliometrics and Future Directions. International Journal of Computational Intelligence Systems, 16(1):1–20, 12 2023.
  19. VoxelMorph: A Learning Framework for Deformable Medical Image Registration. IEEE Transactions on Medical Imaging, 38(8):1788–1800, 2019.
  20. U-Net: Convolutional Networks for Biomedical Image Segmentation. IEEE Access, 9:16591–16603, 2015.
  21. Spatial transformer networks. In Advances in Neural Information Processing Systems, volume 2015-Janua, pages 2017–2025, 2015.
  22. An Unsupervised Learning Model for Deformable Medical Image Registration. In Proceedings of the IEEE Computer Society Conference on Computer Vision and Pattern Recognition, pages 9252–9260, 2018.
  23. Best practices for convolutional neural networks applied to visual document analysis. Proceedings of the International Conference on Document Analysis and Recognition, ICDAR, 2003-Janua(May 2014):958–963, 2003.
  24. Mutual-information-based registration of medical images: A survey. IEEE Transactions on Medical Imaging, 22(8):986–1004, 2003.
  25. TensorFlow: Large-Scale Machine Learning on Heterogeneous Distributed Systems.
  26. GitHub - keras-team/keras: Deep Learning for humans.
  27. Explainable liver tumor delineation in surgical specimens using hyperspectral imaging and deep learning. Biomedical Optics Express, 12(7), 2021.
Citations (2)

Summary

We haven't generated a summary for this paper yet.