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FairSeg: A Large-Scale Medical Image Segmentation Dataset for Fairness Learning Using Segment Anything Model with Fair Error-Bound Scaling (2311.02189v5)

Published 3 Nov 2023 in cs.CV

Abstract: Fairness in artificial intelligence models has gained significantly more attention in recent years, especially in the area of medicine, as fairness in medical models is critical to people's well-being and lives. High-quality medical fairness datasets are needed to promote fairness learning research. Existing medical fairness datasets are all for classification tasks, and no fairness datasets are available for medical segmentation, while medical segmentation is an equally important clinical task as classifications, which can provide detailed spatial information on organ abnormalities ready to be assessed by clinicians. In this paper, we propose the first fairness dataset for medical segmentation named Harvard-FairSeg with 10,000 subject samples. In addition, we propose a fair error-bound scaling approach to reweight the loss function with the upper error-bound in each identity group, using the segment anything model (SAM). We anticipate that the segmentation performance equity can be improved by explicitly tackling the hard cases with high training errors in each identity group. To facilitate fair comparisons, we utilize a novel equity-scaled segmentation performance metric to compare segmentation metrics in the context of fairness, such as the equity-scaled Dice coefficient. Through comprehensive experiments, we demonstrate that our fair error-bound scaling approach either has superior or comparable fairness performance to the state-of-the-art fairness learning models. The dataset and code are publicly accessible via https://ophai.hms.harvard.edu/datasets/harvard-fairseg10k.

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Authors (6)
  1. Yu Tian (249 papers)
  2. Min Shi (39 papers)
  3. Yan Luo (77 papers)
  4. Ava Kouhana (2 papers)
  5. Tobias Elze (8 papers)
  6. Mengyu Wang (28 papers)
Citations (5)

Summary

Insightful Overview of "FairSeg: A Large-Scale Medical Image Segmentation Dataset for Fairness Learning"

The paper "FairSeg: A Large-Scale Medical Image Segmentation Dataset for Fairness Learning Using Segment Anything Model with Fair Error-Bound Scaling" introduces a pivotal resource to the field of medical image analysis by addressing fairness in the context of medical image segmentation. The research is conducted by a group at Harvard Ophthalmology AI Lab and aims to fill the notable gap in fairness datasets available for segmentation tasks in medical imaging, a domain primarily dominated by classification tasks.

Core Contributions

The key contribution of this paper is the introduction of the Harvard-FairSeg dataset. The dataset is unique due to its focus on fairness in medical segmentation, specifically prepared to assess and address biases related to demographic attributes such as race, gender, and ethnicity. The dataset consists of 10,000 samples featuring optic disc and cup segmentation data, meticulously curated to serve as a benchmark for fairness learning in medical models.

Significantly, the paper proposes a novel approach dubbed Fair Error-Bound Scaling (FEBS). This methodology incorporates fairness by rescaling the loss function according to the upper error bounds within each identity group. This approach primarily targets the segments of data that present the biggest challenges, potentially skewing model performance due to inherent biases related to pathophysiological and anatomical differences among demographic groups.

Evaluation and Methodology

The paper presents a detailed evaluation using the newly introduced dataset along with multiple state-of-the-art fairness learning algorithms, comparing them through innovative equity-scaled performance metrics. This includes metrics like the equity-scaled Dice coefficient, specifically designed to facilitate fairer comparisons in performance across different demographic segments.

The segmentation models employed for benchmark evaluations include the Segment Anything Model (SAM), which is adapted through the introduction of FEBS to achieve improved fairness outcomes. Furthermore, more conventional metrics such as the Dice coefficient and Intersection over Union (IoU) are used to validate segmentation accuracy, while innovative metrics aim to balance this accuracy with fairness considerations.

Strong Numerical Results

Through comprehensive experiments, the FEBS approach either outperforms or delivers comparable results when juxtaposed with the state-of-the-art fairness learning models. It is demonstrated that fairness can indeed be integrated into segmentation tasks without substantially compromising performance accuracy, thus bridging the chasm between accurate diagnoses and equitable healthcare delivery.

Implications and Future Directions

The implications of this paper are both practical and theoretical. Practically, it paves the way for the integration of fairness-centric methodologies in the deployment of AI models within clinical settings. Theoretically, it opens up avenues for further research into developing robust methods that can address fairness in more diverse contexts, including other forms of medical imaging tasks and more complex datasets.

The researchers meticulously address the challenges around ensuring fairness in segmentation tasks, noting barriers such as data collection constraints and the necessity for manual annotations, which can be both time-consuming and resource-intensive. As the field advances, there is a call for more automated solutions that can reduce biases while maintaining performance, necessitating further exploration into algorithmic debiasing methods tailored for segmentation tasks.

Conclusion

This paper stands as a significant addition to fairness research within the domain of medical image analysis, presenting novel datasets and methodologies that address fairness comprehensively. The introduction of the Harvard-FairSeg dataset and the new FEBS approach are expected to have a lasting impact on the development of fair medical imaging AI systems. As fairness in AI becomes a pressing concern, particularly in sensitive fields like medicine, this work underscores the need for continual advancement in datasets, methodologies, and metrics to achieve equitable healthcare outcomes.

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