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Regularized Stokeslet Surfaces (2310.14470v2)

Published 23 Oct 2023 in math.NA and cs.NA

Abstract: An extension of the Method of Regularized Stokeslets (MRS) in three dimensions is developed for triangulated surfaces with a piecewise linear force distribution. The method extends the regularized Stokeslet segment methodology used for piecewise linear curves. By using analytic integration of the regularized Stokeslet kernel over the triangles, the regularization parameter $\epsilon$ is effectively decoupled from the spatial discretization of the surface. This is in contrast to the usual implementation of the method in which the regularization parameter is chosen for accuracy reasons to be about the same size as the spatial discretization. The validity of the method is demonstrated through several examples, including the flow around a rigidly translating/rotating sphere, a rotating spheroid, and the squirmer model for self-propulsion. Notably, second order convergence in the spatial discretization for fixed $\epsilon$ is demonstrated. Considerations of mesh design and choice of regularization parameter are discussed, and the performance of the method is compared with existing quadrature-based implementations.

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References (46)
  1. James Gray and GJ Hancock. The propulsion of sea-urchin spermatozoa. Journal of Experimental Biology, 32(4):802–814, 1955.
  2. Biofluidmechanics of reproduction. Annual Review of Fluid Mechanics, 38(1):371–394, 2006.
  3. Mammalian sperm motility: Observation and theory. Annual Review of Fluid Mechanics, 43(1):501–528, 2011.
  4. Motile curved bacteria are pareto-optimal. Proceedings of the National Academy of Sciences, 116(29):14440–14447, 2019.
  5. Fluid mechanics of propulsion by cilia and flagella. Annual Review of Fluid Mechanics, 9(1):339–398, 1977.
  6. Mixing and transport by ciliary carpets: a numerical study. Journal of Fluid Mechanics, 743:124–140, 2014.
  7. A multiscale biophysical model gives quantized metachronal waves in a lattice of beating cilia. Proceedings of the National Academy of Sciences, 119(4):e2113539119, 2022.
  8. A physical introduction to suspension dynamics, volume 45. Cambridge University Press, 2011.
  9. Hydrodynamic simulations of self-phoretic microswimmers. Soft matter, 10(33):6208–6218, 2014.
  10. Phoretic self-propulsion at finite péclet numbers. Journal of fluid mechanics, 747:572–604, 2014.
  11. Microrobots for minimally invasive medicine. Annual review of biomedical engineering, 12:55–85, 2010.
  12. Magnetically driven micro and nanorobots. Chemical Reviews, 121(8):4999–5041, 2021.
  13. Ricardo Cortez. The method of regularized stokeslets. SIAM Journal on Scientific Computing, 23(4):1204–1225, 2001.
  14. The method of regularized stokeslets in three dimensions: Analysis, validation, and application to helical swimming. Physics of Fluids, 17, 02 2005.
  15. C. Pozrikidis. Boundary Integral and Singularity Methods for Linearized Viscous Flow. Cambridge Texts in Applied Mathematics. Cambridge University Press, 1992.
  16. Sarah D. Olson. Fluid dynamic model of invertebrate sperm chemotactic motility with varying calcium inputs. Journal of Biomechanics, 46(2):329–337, 2013. Special Issue: Biofluid Mechanics.
  17. Swimming speeds of filaments in viscous fluids with resistance. Phys. Rev. E, 93:043108, Apr 2016.
  18. A three-dimensional model of flagellar swimming in a brinkman fluid. Journal of Fluid Mechanics, 864:1088–1124, 2019.
  19. A regularised singularity approach to phoretic problems. The European Physical Journal E, 38:1–7, 2015.
  20. Clustering-induced self-propulsion of isotropic autophoretic particles. Soft matter, 14(35):7155–7173, 2018.
  21. Effects of cell morphology and attachment to a surface on the hydrodynamic performance of unicellular choanoflagellates. Journal of the Royal Society Interface, 16(150):20180736, 2019.
  22. Locomotion of a single-flagellated bacterium. Journal of Fluid Mechanics, 859:586–612, 2019.
  23. The method of images for regularized stokeslets. Journal of Computational Physics, 227(9):4600–4616, 2008.
  24. A general system of images for regularized stokeslets and other elements near a plane wall. Journal of Computational Physics, 285:41–54, 2015.
  25. Regularized image system for stokes flow outside a solid sphere. Journal of Computational Physics, 317:165–184, 2016.
  26. An explicit formula for two-dimensional singly-periodic regularized stokeslets flow bounded by a plane wall. Communications in Computational Physics, 23(1):142–167, 2018.
  27. A fast numerical method for computing doubly-periodic regularized stokes flow in 3d. Journal of Computational Physics, 258:1–14, 02 2014.
  28. Numerical computation of doubly-periodic stokes flow bounded by a plane with applications to nodal cilia. Communications in Computational Physics, 22(3):620–642, 2017.
  29. David Smith. A boundary element regularised stokeslet method applied to cilia and flagella-driven flow. Proceedings of the Royal Society A: Mathematical, Physical and Engineering Sciences, 465, 09 2009.
  30. A. Barrero-Gil. Weakening accuracy dependence with the regularization parameter in the method of regularized stokeslets. Journal of Computational and Applied Mathematics, 237(1):672–679, 2013.
  31. David J. Smith. A nearest-neighbour discretisation of the regularized stokeslet boundary integral equation. Journal of Computational Physics, 358:88–102, 2018.
  32. Sharp quadrature error bounds for the nearest-neighbor discretization of the regularized stokeslet boundary integral equation. SIAM Journal on Scientific Computing, 41(1):B139–B152, 2019.
  33. Ricardo Cortez. Regularized stokeslet segments. Journal of Computational Physics, 375:783–796, 2018.
  34. Fluid Mechanics: Volume 6. Number v. 6. Elsevier Science, 1987.
  35. John Burkhardt. Sphere_delaunay delaunay triangulation of points on the unit sphere, 2019. Accessed on June 3, 2023.
  36. Per-Olof Persson. Distmesh distmesh - a simple mesh generator in matlab, 2012. Accessed on September 1, 2023.
  37. A simple mesh generator in matlab. SIAM review, 46(2):329–345, 2004.
  38. Sangtae Kim. Ellipsoidal microhydrodynamics without elliptic integrals and how to get there using linear operator theory. Industrial & Engineering Chemistry Research, 54(42):10497–10501, 2015.
  39. Hydromechanics of low-reynolds-number flow. part 1. rotation of axisymmetric prolate bodies. Journal of Fluid Mechanics, 63(3):607–622, 1974.
  40. Michael James Lighthill. On the squirming motion of nearly spherical deformable bodies through liquids at very small reynolds numbers. Communications on Pure and Applied Mathematics, 5:109–118, 1952.
  41. J. R. Blake. A spherical envelope approach to ciliary propulsion. Journal of Fluid Mechanics, 46(1):199–208, 1971.
  42. Squirmer hydrodynamics near a periodic surface topography. Frontiers in Cell and Developmental Biology, 11, 2023.
  43. Stefanos-Aldo Papanicolopulos. New fully symmetric and rotationally symmetric cubature rules on the triangle using minimal orthonormal bases. Journal of Computational and Applied Mathematics, 294:39–48, 2016.
  44. M. E. Laursen and M. Gellert. Some criteria for numerically integrated matrices and quadrature formulas for triangles. International Journal for Numerical Methods in Engineering, 12(1):67–76, 1978.
  45. Ethan Kubatko. quadtriangle, 2019. Accessed on September 1, 2023.
  46. Constantine Pozrikidis. Introduction to theoretical and computational fluid dynamics. Oxford University Press, New York, NY, 2 edition, November 2011.

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