Papers
Topics
Authors
Recent
Gemini 2.5 Flash
Gemini 2.5 Flash
139 tokens/sec
GPT-4o
7 tokens/sec
Gemini 2.5 Pro Pro
46 tokens/sec
o3 Pro
4 tokens/sec
GPT-4.1 Pro
38 tokens/sec
DeepSeek R1 via Azure Pro
28 tokens/sec
2000 character limit reached

BMAD: Benchmarks for Medical Anomaly Detection (2306.11876v3)

Published 20 Jun 2023 in eess.IV and cs.CV

Abstract: Anomaly detection (AD) is a fundamental research problem in machine learning and computer vision, with practical applications in industrial inspection, video surveillance, and medical diagnosis. In medical imaging, AD is especially vital for detecting and diagnosing anomalies that may indicate rare diseases or conditions. However, there is a lack of a universal and fair benchmark for evaluating AD methods on medical images, which hinders the development of more generalized and robust AD methods in this specific domain. To bridge this gap, we introduce a comprehensive evaluation benchmark for assessing anomaly detection methods on medical images. This benchmark encompasses six reorganized datasets from five medical domains (i.e. brain MRI, liver CT, retinal OCT, chest X-ray, and digital histopathology) and three key evaluation metrics, and includes a total of fourteen state-of-the-art AD algorithms. This standardized and well-curated medical benchmark with the well-structured codebase enables comprehensive comparisons among recently proposed anomaly detection methods. It will facilitate the community to conduct a fair comparison and advance the field of AD on medical imaging. More information on BMAD is available in our GitHub repository: https://github.com/DorisBao/BMAD

Definition Search Book Streamline Icon: https://streamlinehq.com
References (79)
  1. Samet Akcay, Amir Atapour-Abarghouei and Toby P Breckon “Ganomaly: Semi-supervised anomaly detection via adversarial training” In Asian conference on computer vision, 2018, pp. 622–637 Springer
  2. “Anomalib: A Deep Learning Library for Anomaly Detection”, 2022 arXiv:2202.08341 [cs.CV]
  3. “The RSNA-ASNR-MICCAI BraTS 2021 benchmark on brain tumor segmentation and radiogenomic classification” In arXiv preprint arXiv:2107.02314, 2021
  4. “Advancing the cancer genome atlas glioma MRI collections with expert segmentation labels and radiomic features” In Scientific data 4.1 Nature Publishing Group, 2017, pp. 1–13
  5. “Fusing unsupervised and supervised deep learning for white matter lesion segmentation” In International Conference on Medical Imaging with Deep Learning, 2019, pp. 63–72 PMLR
  6. “Diagnostic assessment of deep learning algorithms for detection of lymph node metastases in women with breast cancer” In Jama 318.22 American Medical Association, 2017, pp. 2199–2210
  7. “Improving unsupervised defect segmentation by applying structural similarity to autoencoders” In arXiv preprint arXiv:1807.02011, 2018
  8. “MVTec AD–A comprehensive real-world dataset for unsupervised anomaly detection” In Proceedings of the IEEE/CVF conference on computer vision and pattern recognition, 2019, pp. 9592–9600
  9. “Uninformed students: Student-teacher anomaly detection with discriminative latent embeddings” In Proceedings of the IEEE/CVF conference on computer vision and pattern recognition, 2020, pp. 4183–4192
  10. “The liver tumor segmentation benchmark (lits)” In arXiv preprint arXiv:1901.04056, 2019
  11. “The liver tumor segmentation benchmark (lits)” In Medical Image Analysis 84 Elsevier, 2023, pp. 102680
  12. Van Loi Cao, Miguel Nicolau and James McDermott “A hybrid autoencoder and density estimation model for anomaly detection” In International Conference on Parallel Problem Solving from Nature, 2016, pp. 717–726 Springer
  13. Van Loi Cao, Miguel Nicolau and James McDermott “One-class classification for anomaly detection with kernel density estimation and genetic programming” In European Conference on Genetic Programming, 2016, pp. 3–18 Springer
  14. “Informative knowledge distillation for image anomaly segmentation” In Knowledge-Based Systems 248 Elsevier, 2022, pp. 108846
  15. Varun Chandola, Arindam Banerjee and Vipin Kumar “Anomaly detection: A survey” In ACM computing surveys (CSUR) 41.3 ACM New York, NY, USA, 2009, pp. 1–58
  16. “UTRAD: Anomaly detection and localization with U-Transformer” In Neural Networks 147 Elsevier, 2022, pp. 53–62
  17. “Unsupervised detection of lesions in brain MRI using constrained adversarial auto-encoders” In arXiv preprint arXiv:1806.04972, 2018
  18. “Padim: a patch distribution modeling framework for anomaly detection and localization” In International Conference on Pattern Recognition, 2021, pp. 475–489 Springer
  19. “Anomaly Detection via Reverse Distillation from One-Class Embedding” In Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern Recognition, 2022, pp. 9737–9746
  20. “Self-supervised Anomaly Detection with Random-shape Pseudo-outliers” In International Conference of the IEEE Engineering in Medicine & Biology Society, 2022
  21. “Memorizing normality to detect anomaly: Memory-augmented deep autoencoder for unsupervised anomaly detection” In Proceedings of the IEEE/CVF International Conference on Computer Vision, 2019, pp. 1705–1714
  22. Denis Gudovskiy, Shun Ishizaka and Kazuki Kozuka “Cflow-ad: Real-time unsupervised anomaly detection with localization via conditional normalizing flows” In Proceedings of the IEEE/CVF Winter Conference on Applications of Computer Vision, 2022, pp. 98–107
  23. “Adbench: Anomaly detection benchmark” In Advances in Neural Information Processing Systems 35, 2022, pp. 32142–32159
  24. “Whole-slide-imaging Cancer Metastases Detection and Localization with Limited Tumorous Data” In Medical Imaging with Deep Learning, 2023
  25. “Divide-and-assemble: Learning block-wise memory for unsupervised anomaly detection” In Proceedings of the IEEE/CVF International Conference on Computer Vision, 2021, pp. 8791–8800
  26. Junjie Hu, Yuanyuan Chen and Zhang Yi “Automated segmentation of macular edema in OCT using deep neural networks” In Medical image analysis 55 Elsevier, 2019, pp. 216–227
  27. Wenping Jin, Fei Guo and Li Zhu “Incremental Self-Supervised Learning Based on Transformer for Anomaly Detection and Localization” In arXiv preprint arXiv:2303.17354, 2023
  28. Antanas Kascenas, Nicolas Pugeault and Alison Q O’Neil “Denoising Autoencoders for Unsupervised Anomaly Detection in Brain MRI” In Medical Imaging with Deep Learning, 2022
  29. “Identifying medical diagnoses and treatable diseases by image-based deep learning” In Cell 172.5 Elsevier, 2018, pp. 1122–1131
  30. “Miccai multi-atlas labeling beyond the cranial vault–workshop and challenge” In Proc. MICCAI Multi-Atlas Labeling Beyond Cranial Vault—Workshop Challenge 5, 2015, pp. 12
  31. Sungwook Lee, Seunghyun Lee and Byung Cheol Song “Cfa: Coupled-hypersphere-based feature adaptation for target-oriented anomaly localization” In IEEE Access 10 IEEE, 2022, pp. 78446–78454
  32. “AnoViT: Unsupervised anomaly detection and localization with vision transformer-based encoder-decoder” In IEEE Access 10 IEEE, 2022, pp. 46717–46724
  33. “Cutpaste: Self-supervised learning for anomaly detection and localization” In Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern Recognition, 2021, pp. 9664–9674
  34. “Anomaly detection via self-organizing map” In 2021 IEEE International Conference on Image Processing (ICIP), 2021, pp. 974–978 IEEE
  35. “Discriminative pattern mining for breast cancer histopathology image classification via fully convolutional autoencoder” In IEEE Access 7 IEEE, 2019, pp. 36433–36445
  36. “Cancer metastasis detection with neural conditional random field” In arXiv preprint arXiv:1806.07064, 2018
  37. “Superpixel masking and inpainting for self-supervised anomaly detection” In Bmvc, 2020
  38. “The multimodal brain tumor image segmentation benchmark (BRATS)” In IEEE transactions on medical imaging 34.10 IEEE, 2014, pp. 1993–2024
  39. “Deep learning for anomaly detection: A review” In ACM computing surveys (CSUR) 54.2 ACM New York, NY, USA, 2021, pp. 1–38
  40. Hyunjong Park, Jongyoun Noh and Bumsub Ham “Learning memory-guided normality for anomaly detection” In Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern Recognition, 2020, pp. 14372–14381
  41. Pramuditha Perera, Ramesh Nallapati and Bing Xiang “Ocgan: One-class novelty detection using gans with constrained latent representations” In Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern Recognition, 2019, pp. 2898–2906
  42. “Unsupervised brain anomaly detection and segmentation with transformers” In arXiv preprint arXiv:2102.11650, 2021
  43. Hari Mohan Rai, Kalyan Chatterjee and Sergey Dashkevich “Automatic and accurate abnormality detection from brain MR images using a novel hybrid UnetResNext-50 deep CNN model” In Biomedical Signal Processing and Control 66 Elsevier, 2021, pp. 102477
  44. “Variational inference with normalizing flows” In International conference on machine learning, 2015, pp. 1530–1538 PMLR
  45. “Towards total recall in industrial anomaly detection” In Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern Recognition, 2022, pp. 14318–14328
  46. Marco Rudolph, Bastian Wandt and Bodo Rosenhahn “Same same but differnet: Semi-supervised defect detection with normalizing flows” In Proceedings of the IEEE/CVF winter conference on applications of computer vision, 2021, pp. 1907–1916
  47. “Asymmetric Student-Teacher Networks for Industrial Anomaly Detection” In Proceedings of the IEEE/CVF Winter Conference on Applications of Computer Vision, 2023, pp. 2592–2602
  48. “Fully convolutional cross-scale-flows for image-based defect detection” In Proceedings of the IEEE/CVF Winter Conference on Applications of Computer Vision, 2022, pp. 1088–1097
  49. “Deep one-class classification” In International conference on machine learning, 2018, pp. 4393–4402 PMLR
  50. “Adversarially learned one-class classifier for novelty detection” In Proceedings of the IEEE conference on computer vision and pattern recognition, 2018, pp. 3379–3388
  51. “Anomaly detection using autoencoders with nonlinear dimensionality reduction” In Proceedings of the MLSDA 2014 2nd workshop on machine learning for sensory data analysis, 2014, pp. 4–11
  52. “Multiresolution knowledge distillation for anomaly detection” In Proceedings of the IEEE/CVF conference on computer vision and pattern recognition, 2021, pp. 14902–14912
  53. “f-AnoGAN: Fast unsupervised anomaly detection with generative adversarial networks” In Medical image analysis 54 Elsevier, 2019, pp. 30–44
  54. “Unsupervised anomaly detection with generative adversarial networks to guide marker discovery” In International conference on information processing in medical imaging, 2017, pp. 146–157 Springer
  55. “Estimating the support of a high-dimensional distribution” In Neural computation 13.7 MIT Press One Rogers Street, Cambridge, MA 02142-1209, USA journals-info …, 2001, pp. 1443–1471
  56. “Detecting Outliers with Foreign Patch Interpolation” In Journal of Machine Learning for Biomedical Imaging 13, 2022
  57. David MJ Tax and Robert PW Duin “Support vector data description” In Machine learning 54.1 Springer, 2004, pp. 45–66
  58. “Unsupervised Visual Defect Detection with Score-Based Generative Model” In arXiv preprint arXiv:2211.16092, 2022
  59. “Computer-aided detection of squamous carcinoma of the cervix in whole slide images” In arXiv preprint arXiv:1905.10959, 2019
  60. “Revisiting Reverse Distillation for Anomaly Detection” In Proceedings of the IEEE conference on computer vision and pattern recognition, 2023
  61. “Student-teacher feature pyramid matching for unsupervised anomaly detection” In arXiv preprint arXiv:2103.04257, 2021
  62. “Chestx-ray8: Hospital-scale chest x-ray database and benchmarks on weakly-supervised classification and localization of common thorax diseases” In Proceedings of the IEEE conference on computer vision and pattern recognition, 2017, pp. 2097–2106
  63. “Diffusion models for medical anomaly detection” In Medical Image Computing and Computer Assisted Intervention–MICCAI 2022: 25th International Conference, Singapore, September 18–22, 2022, Proceedings, Part VIII, 2022, pp. 35–45 Springer
  64. “AnoDDPM: Anomaly Detection With Denoising Diffusion Probabilistic Models Using Simplex Noise” In Proceedings of the IEEE/CVF Winter Conference on Computer Vision and Pattern Recognition (CVPR) Workshops, 2022, pp. 650–656
  65. “Im-iad: Industrial image anomaly detection benchmark in manufacturing” In arXiv preprint arXiv:2301.13359, 2023
  66. “Reconstruction student with attention for student-teacher pyramid matching” In arXiv preprint arXiv:2111.15376, 2021
  67. “Learning semantic context from normal samples for unsupervised anomaly detection” In Proceedings of the AAAI Conference on Artificial Intelligence 35.4, 2021, pp. 3110–3118
  68. “OpenOOD: Benchmarking Generalized Out-of-Distribution Detection” In Advances in neural information processing systems,Track on Datasets and Benchmarks, 2022
  69. “Patch svdd: Patch-level svdd for anomaly detection and segmentation” In Proceedings of the Asian Conference on Computer Vision, 2020
  70. “Adtr: Anomaly detection transformer with feature reconstruction” In Neural Information Processing: 29th International Conference, ICONIP 2022, Virtual Event, November 22–26, 2022, Proceedings, Part III, 2023, pp. 298–310 Springer
  71. “Fastflow: Unsupervised anomaly detection and localization via 2d normalizing flows” In arXiv preprint arXiv:2111.07677, 2021
  72. Vitjan Zavrtanik, Matej Kristan and Danijel Skočaj “Draem-a discriminatively trained reconstruction embedding for surface anomaly detection” In Proceedings of the IEEE/CVF International Conference on Computer Vision, 2021, pp. 8330–8339
  73. Vitjan Zavrtanik, Matej Kristan and Danijel Skočaj “Reconstruction by inpainting for visual anomaly detection” In Pattern Recognition 112 Elsevier, 2021, pp. 107706
  74. “Viral pneumonia screening on chest X-rays using confidence-aware anomaly detection” In IEEE transactions on medical imaging 40.3 IEEE, 2020, pp. 879–890
  75. “Benchmarking unsupervised anomaly detection and localization” In arXiv preprint arXiv:2205.14852, 2022
  76. Chong Zhou and Randy C Paffenroth “Anomaly detection with robust deep autoencoders” In Proceedings of the 23rd ACM SIGKDD international conference on knowledge discovery and data mining, 2017, pp. 665–674
  77. “Encoding structure-texture relation with p-net for anomaly detection in retinal images” In European conference on computer vision, 2020, pp. 360–377 Springer
  78. “Memorizing structure-texture correspondence for image anomaly detection” In IEEE Transactions on Neural Networks and Learning Systems IEEE, 2021
  79. “Sparse-gan: Sparsity-constrained generative adversarial network for anomaly detection in retinal oct image” In 2020 IEEE 17th International Symposium on Biomedical Imaging (ISBI), 2020, pp. 1227–1231 IEEE
Citations (12)

Summary

We haven't generated a summary for this paper yet.

Github Logo Streamline Icon: https://streamlinehq.com