Papers
Topics
Authors
Recent
Gemini 2.5 Flash
Gemini 2.5 Flash
167 tokens/sec
GPT-4o
7 tokens/sec
Gemini 2.5 Pro Pro
42 tokens/sec
o3 Pro
4 tokens/sec
GPT-4.1 Pro
38 tokens/sec
DeepSeek R1 via Azure Pro
28 tokens/sec
2000 character limit reached

Deep learning for diffusion in porous media (2304.02104v2)

Published 4 Apr 2023 in physics.comp-ph, cs.CV, cs.LG, and physics.flu-dyn

Abstract: We adopt convolutional neural networks (CNN) to predict the basic properties of the porous media. Two different media types are considered: one mimics the sand packings, and the other mimics the systems derived from the extracellular space of biological tissues. The Lattice Boltzmann Method is used to obtain the labeled data necessary for performing supervised learning. We distinguish two tasks. In the first, networks based on the analysis of the system's geometry predict porosity and effective diffusion coefficient. In the second, networks reconstruct the concentration map. In the first task, we propose two types of CNN models: the C-Net and the encoder part of the U-Net. Both networks are modified by adding a self-normalization module [Graczyk \textit{et al.}, Sci Rep 12, 10583 (2022)]. The models predict with reasonable accuracy but only within the data type, they are trained on. For instance, the model trained on sand packings-like samples overshoots or undershoots for biological-like samples. In the second task, we propose the usage of the U-Net architecture. It accurately reconstructs the concentration fields. In contrast to the first task, the network trained on one data type works well for the other. For instance, the model trained on sand packings-like samples works perfectly on biological-like samples. Eventually, for both types of the data, we fit exponents in the Archie's law to find tortuosity that is used to describe the dependence of the effective diffusion on porosity.

Definition Search Book Streamline Icon: https://streamlinehq.com
References (39)
  1. Diffusion through porous materials. \JournalTitleNature 189, 980–981 (1961).
  2. Critical review of the impact of tortuosity on diffusion. \JournalTitleChemical Engineering Science 62, 3748–3755 (2007).
  3. Kuhn, T. et al. Single-molecule tracking of nodal and lefty in live zebrafish embryos supports hindered diffusion model. \JournalTitleNature communications 13, 1–15 (2022).
  4. Muñoz-Gil, G. et al. Objective comparison of methods to decode anomalous diffusion. \JournalTitleNature Communications 12, 6253, DOI: 10.1038/s41467-021-26320-w (2021).
  5. Diffusion in brain extracellular space. \JournalTitlePhysiological reviews 88, 1277–1340 (2008).
  6. Nicholson, C. Diffusion and related transport mechanisms in brain tissue. \JournalTitleReports on progress in Physics 64, 815 (2001).
  7. Transport in the brain extracellular space: diffusion, but which kind? \JournalTitleInternational Journal of Molecular Sciences 23, 12401 (2022).
  8. Diffusion in porous media: phenomena and mechanisms. \JournalTitleTransport in Porous Media 130, 105–127 (2019).
  9. Changes in brain cell shape create residual extracellular space volume and explain tortuosity behavior during osmotic challenge. \JournalTitleProceedings of the National Academy of Sciences 97, 8306–8311 (2000).
  10. Homogenization-informed convolutional neural networks for estimation of li-ion battery effective properties. \JournalTitleTransport in Porous Media 1–22 (2022).
  11. Wernert, V. et al. Tortuosity of hierarchical porous materials: Diffusion experiments and random walk simulations. \JournalTitleChemical Engineering Science 264, 118136 (2022).
  12. Study on pore characteristics and microstructure of sandstones with different grain sizes. \JournalTitleJournal of Applied Geophysics 136, 364–371, DOI: https://doi.org/10.1016/j.jappgeo.2016.11.015 (2017).
  13. Kinney, J. P. et al. Extracellular sheets and tunnels modulate glutamate diffusion in hippocampal neuropil. \JournalTitleJournal of Comparative Neurology 521, 448–464 (2013).
  14. Godin, A. G. et al. Single-nanotube tracking reveals the nanoscale organization of the extracellular space in the live brain. \JournalTitleNature Nanotechnology 12, 238–243, DOI: 10.1038/nnano.2016.248 (2017).
  15. Stochastic langevin model for flow and transport in porous media. \JournalTitlePhys. Rev. Lett. 101, 044502, DOI: 10.1103/PhysRevLett.101.044502 (2008).
  16. Kalz, E. et al. Collisions enhance self-diffusion in odd-diffusive systems. \JournalTitlePhys. Rev. Lett. 129, 090601, DOI: 10.1103/PhysRevLett.129.090601 (2022).
  17. How stickiness can speed up diffusion in confined systems. \JournalTitlePhys. Rev. Lett. 128, 210601, DOI: 10.1103/PhysRevLett.128.210601 (2022).
  18. Kasthuri, N. et al. Saturated Reconstruction of a Volume of Neocortex. \JournalTitleCell 162, 648–661, DOI: 10.1016/j.cell.2015.06.054 (2015).
  19. Linking morphology of porous media to their macroscopic permeability by deep learning. \JournalTitleTransport in Porous Media 131, DOI: 10.1007/s11242-019-01352-5 (2020).
  20. Santos, J. E. et al. Computationally efficient multiscale neural networks applied to fluid flow in complex 3d porous media. \JournalTitleTransport in porous media 140, 241–272 (2021).
  21. Predicting porosity, permeability, and tortuosity of porous media from images by deep learning. \JournalTitleScientific reports 10, 1–11 (2020).
  22. Accurately predicting transport properties of porous fibrous materials by machine learning methods. \JournalTitleElectrochemical Science Advances e2100185 (2022).
  23. Convolutional neural network based prediction of effective diffusivity from microscope images. \JournalTitleJournal of Applied Physics 131, 214901 (2022).
  24. Inverse design of anisotropic spinodoid materials with prescribed diffusivity. \JournalTitleScientific Reports 12, 17413, DOI: 10.1038/s41598-022-21451-6 (2022).
  25. Physics- and image-based prediction of fluid flow and transport in complex porous membranes and materials by deep learning. \JournalTitleJournal of Membrane Science 622, 119050, DOI: https://doi.org/10.1016/j.memsci.2021.119050 (2021).
  26. Seeing permeability from images: fast prediction with convolutional neural networks. \JournalTitleScience Bulletin 63, 1215–1222, DOI: https://doi.org/10.1016/j.scib.2018.08.006 (2018).
  27. Simulating fluid flow in complex porous materials by integrating the governing equations with deep-layered machines. \JournalTitlenpj Computational Materials 7, 127, DOI: 10.1038/s41524-021-00598-2 (2021).
  28. Machine learning in geo- and environmental sciences: From small to large scale. \JournalTitleAdvances in Water Resources 142, 103619, DOI: https://doi.org/10.1016/j.advwatres.2020.103619 (2020).
  29. Self-normalized density map (sndm) for counting microbiological objects. \JournalTitleScientific Reports 12, 10583, DOI: 10.1038/s41598-022-14879-3 (2022).
  30. U-net: Convolutional networks for biomedical image segmentation (2015). 1505.04597.
  31. Dropout as a bayesian approximation: Representing model uncertainty in deep learning (2015). 1506.02142.
  32. Predicting effective diffusivity of porous media from images by deep learning. \JournalTitleScientific Reports 9, 20387, DOI: 10.1038/s41598-019-56309-x (2019).
  33. Paszke, A. et al. Pytorch: An imperative style, high-performance deep learning library. In Advances in Neural Information Processing Systems 32, 8024–8035 (Curran Associates, Inc., 2019).
  34. Dropout as a bayesian approximation: Appendix (2015). 1506.02157.
  35. Percolation of overlapping squares or cubes on a lattice. \JournalTitleJournal of Statistical Mechanics: Theory and Experiment 2014, P11005 (2014).
  36. Boudreau, B. P. The diffusive tortuosity of fine-grained unlithified sediments. \JournalTitleGeochimica et Cosmochimica Acta 60, 3139–3142, DOI: https://doi.org/10.1016/0016-7037(96)00158-5 (1996).
  37. Krüger, T. et al. The Lattice Boltzmann Method - Principles and Practice (Springer Cham, 2016).
  38. Succi, S. The Lattice Boltzmann Equation: For Complex States of Flowing Matter (Oxford University Press, 2018).
  39. A Model for Collision Processes in Gases. I. Small Amplitude Processes in Charged and Neutral One-Component Systems. \JournalTitlePhys. Rev. 94, 511–525, DOI: 10.1103/PhysRev.94.511 (1954).
Citations (9)

Summary

We haven't generated a summary for this paper yet.