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A Survey of Deep Graph Clustering: Taxonomy, Challenge, Application, and Open Resource (2211.12875v4)

Published 23 Nov 2022 in cs.LG and cs.AI

Abstract: Graph clustering, which aims to divide nodes in the graph into several distinct clusters, is a fundamental yet challenging task. Benefiting from the powerful representation capability of deep learning, deep graph clustering methods have achieved great success in recent years. However, the corresponding survey paper is relatively scarce, and it is imminent to make a summary of this field. From this motivation, we conduct a comprehensive survey of deep graph clustering. Firstly, we introduce formulaic definition, evaluation, and development in this field. Secondly, the taxonomy of deep graph clustering methods is presented based on four different criteria, including graph type, network architecture, learning paradigm, and clustering method. Thirdly, we carefully analyze the existing methods via extensive experiments and summarize the challenges and opportunities from five perspectives, including graph data quality, stability, scalability, discriminative capability, and unknown cluster number. Besides, the applications of deep graph clustering methods in six domains, including computer vision, natural language processing, recommendation systems, social network analyses, bioinformatics, and medical science, are presented. Last but not least, this paper provides open resource supports, including 1) a collection (\url{https://github.com/yueliu1999/Awesome-Deep-Graph-Clustering}) of state-of-the-art deep graph clustering methods (papers, codes, and datasets) and 2) a unified framework (\url{https://github.com/Marigoldwu/A-Unified-Framework-for-Deep-Attribute-Graph-Clustering}) of deep graph clustering. We hope this work can serve as a quick guide and help researchers overcome challenges in this vibrant field.

Citations (11)

Summary

  • The paper presents a unified taxonomy categorizing deep graph clustering methods by graph type, network architecture, learning paradigm, and clustering technique.
  • It leverages deep learning, particularly GNNs, to enhance node embedding and improve clustering performance in unsupervised settings.
  • It identifies challenges such as noisy data, scalability issues, and unknown cluster numbers while providing open resources for further research.

A Survey of Deep Graph Clustering: Taxonomy, Challenge, Application, and Open Resource

The paper presents a comprehensive survey on the subject of deep graph clustering, addressing a significant gap in the current literature by systematically categorizing existing methodologies, identifying key challenges, and exploring diverse applications. With the increasing applicability of graph structures in various domains and the burgeoning potential of deep learning, the authors have undertaken the task of unifying research efforts under a coherent taxonomy while providing valuable insights into future research directions.

Overview of Deep Graph Clustering

Deep graph clustering aims to partition a graph's nodes into distinct clusters in an unsupervised manner, leveraging deep learning to capture the underlying data structure more effectively than traditional methods. Benefiting from the expressive power of deep networks, particularly GNNs, these approaches have demonstrated substantial advancements in performance. The paper delineates a clear process, starting with node embedding into a latent space via self-supervised methods, followed by clustering using various techniques, which are elaborated comprehensively.

Taxonomy of Approaches

The authors categorize deep graph clustering methods based on four primary features:

  1. Graph Type: The paper classifies methods according to the input graph type, including pure structure graphs, attribute graphs, heterogeneous graphs, and dynamic graphs.
  2. Network Architecture: Methods are segmented into MLP-based, GNN-based, and hybrid architectures, reflecting differing strategies for feature extraction and data representation.
  3. Learning Paradigm: This includes reconstructive, adversarial, and contrastive learning paradigms, with hybrid methods combining these to exploit various advantages.
  4. Clustering Method: Traditional clustering techniques are distinguished from neural clustering methods, where the latter allows joint optimization with neural networks, facilitating end-to-end learning.

Key Challenges

Despite substantial advancements, several unresolved challenges persist:

  • Graph Data Quality: Real-world graphs often contain noisy and incomplete data, necessitating robust methods for effective clustering.
  • Stability: Ensuring consistent performance across varying initializations and configurations remains a concern.
  • Scalability: Many current methods struggle with large-scale graphs due to computational and memory constraints.
  • Discriminative Capability: Enhancing the ability to differentiate between cluster distributions is crucial.
  • Unknown Cluster Number: Most techniques assume a predefined number of clusters, which is not always feasible in unsupervised settings.

Applications and Implications

Deep graph clustering finds relevance across several domains:

  • Natural Language Processing and Computer Vision: Tasks such as document categorization and image segmentation benefit significantly from graph-based methods.
  • Social Network Analysis and Recommendation Systems: Node clustering aids in community detection and user preference modeling.
  • Bioinformatics and Medical Science: Graph clustering is vital for genetic data analysis and disease modeling.

Open Resources and Future Directions

The paper highlights two significant open resources: a collection of deep graph clustering methods and a unified implementation framework. These resources serve as practical tools for researchers to benchmark and develop improved strategies. The future of deep graph clustering lies in overcoming the mentioned challenges and broadening the applicability of methods to accommodate more complex and varied scenarios.

Conclusion

This survey not only charts the current landscape of deep graph clustering but also sets the stage for future explorations. By providing a well-organized taxonomy and identifying key technical challenges, the paper encourages continued innovation and refinement in the field. Its commitment to open resources fosters collaboration, ensuring that researchers can collectively advance the capabilities of deep graph clustering technologies.