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Deep Learning Based Brain Tumor Segmentation: A Survey (2007.09479v3)

Published 18 Jul 2020 in eess.IV and cs.CV

Abstract: Brain tumor segmentation is one of the most challenging problems in medical image analysis. The goal of brain tumor segmentation is to generate accurate delineation of brain tumor regions. In recent years, deep learning methods have shown promising performance in solving various computer vision problems, such as image classification, object detection and semantic segmentation. A number of deep learning based methods have been applied to brain tumor segmentation and achieved promising results. Considering the remarkable breakthroughs made by state-of-the-art technologies, we use this survey to provide a comprehensive study of recently developed deep learning based brain tumor segmentation techniques. More than 100 scientific papers are selected and discussed in this survey, extensively covering technical aspects such as network architecture design, segmentation under imbalanced conditions, and multi-modality processes. We also provide insightful discussions for future development directions.

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Authors (9)
  1. Zhihua Liu (28 papers)
  2. Lei Tong (15 papers)
  3. Zheheng Jiang (13 papers)
  4. Long Chen (395 papers)
  5. Feixiang Zhou (12 papers)
  6. Qianni Zhang (30 papers)
  7. Xiangrong Zhang (17 papers)
  8. Yaochu Jin (108 papers)
  9. Huiyu Zhou (109 papers)
Citations (188)

Summary

Deep Learning Based Brain Tumor Segmentation: A Survey

Brain tumor segmentation is a critical task in medical image analysis, aiming to accurately distinguish tumor tissues from healthy brain tissues in imaging data. The paper "Deep Learning Based Brain Tumor Segmentation: A Survey" provides a comprehensive overview of the application of deep learning techniques to this challenging problem, highlighting advances made in network architecture design, strategies to handle data imbalance, and methods to utilize multi-modality imaging effectively.

Network Architecture and Module Design

Deep learning methods have shown considerable promise in brain tumor segmentation. One of the focal points in research is the design of effective network architectures and modules. The survey discusses the transition from single-path to multi-path networks and the evolution of simple neural networks to complex encoder-decoder structures. For instance, while early research focused on CNNs with large kernels for global feature extraction, subsequent work leveraged smaller kernels and residual connections to stabilize training and enhance accuracy. The use of U-Net and its variants has become prevalent, accommodating skip connections to preserve spatial details, crucial for accurate tumor delineation.

Additionally, innovative module designs like dilated convolutions and attention mechanisms are employed to maintain resolution while expanding receptive fields. Efficient computation strategies, including reversible networks and less resource-intensive modules, are also discussed as means to reduce computational costs without compromising segmentation precision.

Segmentation Under Imbalanced Conditions

Data imbalance, particularly in brain tumor segmentation, poses significant challenges—given the disproportionate number of voxels across tumor sub-regions and varying sample sizes between different tumor types. The survey categorizes solutions into network cascade, network ensemble, multi-task learning, and customized loss functions.

Network cascades and ensembles aim to combine multiple models to maximize segmentation accuracy by leveraging diverse hypothesis spaces and avoiding local optimums. Multi-task learning introduces auxiliary tasks that help regularize the main segmentation task, often leading to enhanced robustness against imbalances. Customized loss functions, including weighted and multi-scale loss designs, are adopted to focus learning on minority classes, thus improving model bias towards less frequent tumor regions.

Utilization of Multi-Modality Imaging

The integration of multi-modality imaging information critically augments segmentation outcomes in brain tumor analysis. The survey outlines strategies for learning across multiple modalities and coping with scenarios of missing modalities. Learning to rank, pair, and fuse modality information ensures optimal use of each type of imaging data (like T1, T2, Flair).

Recent work leverages attention-based mechanisms to enhance feature fusion, optimizing the integration process. Furthermore, dealing with missing modalities by generating synthetic data through techniques such as GANs is addressed, offering solutions to scenarios where full modality sets are unavailable.

Implications and Future Directions

The survey underscores the substantial impact of deep learning on brain tumor segmentation, offering potential improvements in clinical applications like diagnosis and treatment planning. As deep learning methodologies advance, further refinement in model architectures, better handling of data imbalance, and effective utilization of multi-modality data are anticipated to enhance performance.

The paper hints at future developments, suggesting exploration of automated architecture search for optimal model design and further integration of domain-specific knowledge into model architectures. These advances could provide more generalized solutions and improve treatment outcomes significantly.

In conclusion, this survey serves as a valuable resource for researchers in medical image analysis, highlighting key innovations and offering insights into the future trajectory of deep learning-based brain tumor segmentation.