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The why, how, and when of representations for complex systems (2006.02870v1)

Published 4 Jun 2020 in cs.SI, cs.DM, and q-bio.QM

Abstract: Complex systems thinking is applied to a wide variety of domains, from neuroscience to computer science and economics. The wide variety of implementations has resulted in two key challenges: the progenation of many domain-specific strategies that are seldom revisited or questioned, and the siloing of ideas within a domain due to inconsistency of complex systems language. In this work we offer basic, domain-agnostic language in order to advance towards a more cohesive vocabulary. We use this language to evaluate each step of the complex systems analysis pipeline, beginning with the system and data collected, then moving through different mathematical formalisms for encoding the observed data (i.e. graphs, simplicial complexes, and hypergraphs), and relevant computational methods for each formalism. At each step we consider different types of \emph{dependencies}; these are properties of the system that describe how the existence of one relation among the parts of a system may influence the existence of another relation. We discuss how dependencies may arise and how they may alter interpretation of results or the entirety of the analysis pipeline. We close with two real-world examples using coauthorship data and email communications data that illustrate how the system under study, the dependencies therein, the research question, and choice of mathematical representation influence the results. We hope this work can serve as an opportunity of reflection for experienced complexity scientists, as well as an introductory resource for new researchers.

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Summary

  • The paper proposes a unified lexicon and framework for complex systems by identifying key dependencies such as subset, temporal, and spatial relationships.
  • It contrasts mathematical formalisms like graphs, simplicial complexes, and hypergraphs, highlighting their trade-offs in modeling higher-order interactions.
  • The study demonstrates practical applications across neuroscience, economics, and computer science, paving the way for AI systems adaptable to evolving system dynamics.

An Analytical Synopsis of "The why, how, and when of representations for complex systems"

This paper presents a comprehensive discussion on the representations used to paper complex systems across various disciplines such as neuroscience, economics, and computer science. The authors, Torres, Blevins, Bassett, and Eliassi-Rad, address the challenges of scattered methodologies and domain-specific language within the field of complex systems. Their work aims to establish a unifying, domain-agnostic lexicon and framework for analyzing complex systems, promoting interdisciplinary dialogue and collaboration.

Overview and Methodological Contributions

The authors begin by articulating the inherent complexity in interpreting systems characterized by numerous interacting components, where collective behaviors arise that are not straightforwardly deducible from individual interactions. They identify emerging patterns, or "dependencies," such as subset, temporal, and spatial dependencies, which influence system dynamics and must be acknowledged in analytical representations.

Subset Dependencies: These occur when the presence of one relation implies others. For instance, in some biological networks, if several proteins form a complex, smaller subsets of this complex might also be biologically relevant assemblies.

Temporal Dependencies: Seen in dynamic systems where sequence and timing significantly impact system behavior. This may include the succession of activities or communications, necessitating time-sensitive analytical models like temporal graphs or higher-order networks.

Spatial Dependencies: Physical proximity influences interactions, as seen in networks like transportation systems or biological neural networks. Spatial dependencies necessitate analytical frameworks that integrate geographical data with interaction patterns.

The various mathematical formalisms employed in complex systems analysis—graphs, simplicial complexes, and hypergraphs—each possess unique advantages and constraints in modeling these dependencies.

  • Graphs, traditionally used to map pairwise relationships, provide a straightforward method but often fail to encapsulate polyadic relations without introducing oversimplifications.
  • Simplicial Complexes capture higher-order interactions due to their inherent structure, which implies all subsets of a relation are also relations, making them adept at modeling systems like neural recordings or social interactions.
  • Hypergraphs allow for more flexible modeling of multi-agent relationships without necessitating the inclusion of all sub-relations, thus enabling the paper of systems with genuinely independent large-scale interactions.

Practical Implications and Research Applications

By applying these frameworks to real-world datasets, the authors emphasize the importance of choosing the appropriate representation based on explicit dependencies and available data. The example applications range from co-authorship networks, where a graph representation may suffice, to complex email communications, where hypergraphs better capture the true dynamics.

The paper also addresses the inherent trade-offs present when moving between different representations: transitioning from hypergraphs to simplicial complexes means losing the independence of relations, whereas transforming graphs to simplicial complexes involves assuming polyadic relations wherever cliques are present.

Future Directions in AI and Complex Systems

The paper suggests potential advancements in applying these formal representations to AI fields, such as the development of intelligent systems capable of recognizing and adapting to system dependencies. Future work could explore dynamic adaptations in AI systems driven by evolving complex system architectures, enhancing understanding and application in areas like brain-computer interfaces or adaptive social platforms.

The insights offered by this paper are poised to enhance the rigor and interoperability of complex systems analysis, underscoring the necessity for precise, reflective modeling choices. By advocating for a common analytical lexicon and offering an overview of the available mathematical tools, the authors contribute meaningfully to advancing complexity science and interdisciplinary research communication.

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