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Artificial neural networks for neuroscientists: A primer (2006.01001v2)

Published 1 Jun 2020 in q-bio.NC and cs.LG

Abstract: Artificial neural networks (ANNs) are essential tools in machine learning that have drawn increasing attention in neuroscience. Besides offering powerful techniques for data analysis, ANNs provide a new approach for neuroscientists to build models for complex behaviors, heterogeneous neural activity and circuit connectivity, as well as to explore optimization in neural systems, in ways that traditional models are not designed for. In this pedagogical Primer, we introduce ANNs and demonstrate how they have been fruitfully deployed to study neuroscientific questions. We first discuss basic concepts and methods of ANNs. Then, with a focus on bringing this mathematical framework closer to neurobiology, we detail how to customize the analysis, structure, and learning of ANNs to better address a wide range of challenges in brain research. To help the readers garner hands-on experience, this Primer is accompanied with tutorial-style code in PyTorch and Jupyter Notebook, covering major topics.

Citations (214)

Summary

  • The paper presents a comprehensive guide for integrating ANN methodologies into neuroscience research.
  • It details various network architectures, including convolutional and recurrent models, for simulating sensory and cognitive systems.
  • The paper highlights techniques for achieving biologically plausible insights and optimizing neural circuit analysis.

Overview of "Artificial Neural Networks for Neuroscientists: A Primer"

Guangyu Robert Yang and Xiao-Jing Wang's paper, "Artificial neural networks for neuroscientists: A primer," presents a comprehensive examination of the intersection between artificial neural networks (ANNs) and neuroscientific research. The document serves as an instructional guide aimed at facilitating the integration of ANN methodologies into neuroscience, providing both theoretical principles and practical applications through tutorial-style code. The authors address the potential of ANNs beyond conventional data analysis, highlighting their ability to model complex behavioral and neuronal systems and to explore optimization within neural circuits.

Key Contributions and Methodological Insights

Integration of ANNs in Neuroscience

The paper delineates the multifaceted roles ANNs play in neuroscience: as tools for data analysis, as models for understanding complex neural behaviors, and as frameworks for optimizing neural networks. The discussion emphasizes the adaptability of ANNs in modeling heterogeneous activity patterns and circuit connectivity that traditional mathematical models might not capture efficiently.

ANN Architectures and Learning Paradigms

ANNs are explored through various architectures such as convolutional and recurrent neural networks. The paper provides detailed descriptions of how these models can simulate visual systems and cognitive processes. Convolutional networks, with their hierarchical architectures, are likened to the ventral visual stream, demonstrating their utility in modeling sensory systems. Conversely, recurrent networks are presented as ideal for modeling temporal processes integral to cognitive neuroscience.

Analytical Techniques and Neural Circuit Interpretation

The authors present techniques for analyzing complex neural networks, making a compelling case for the application of these methods to biological neural systems. They discuss comparative techniques employing high-throughput quantitative methods, complex tuning analysis, and fixed-point-based dynamical systems analysis. These proposals aim to elucidate the underlying neural dynamics and computational mechanisms in a manner analogous to biological systems.

Biologically Realistic Network Models

A significant portion of the paper is dedicated to bridging the gap between ANN architectures and realistic biological models. The authors explore how structured connections, canonical computations, and biologically plausible learning algorithms, such as Hebbian plasticity, can imbue ANN models with greater biological fidelity. This approach secures insights into not only how but why certain neural mechanisms emerge, drawing parallels between ANN solutions and evolutionary pressures in biological systems.

Implications and Future Directions

This primer underscores the symbiotic relationship between advances in ANNs and the potential to investigate neuroscientific hypotheses with increased complexity and scale. The authors advise that researchers continue to explore biologically-inspired ANN models and emphasize the importance of detailed analysis post-training to extract meaningful predictions applicable to biological systems.

Further advancements in spiking neural networks, standardized protocols for brain-like RNNs, and detailed behavioral predictions are suggested as future focus areas to enhance the applicability of ANNs in neuroscience. The emphasis is on creating frameworks that not only mimic but also provide insights into the intricate workings of biological neural circuits.

Conclusion

Yang and Wang's paper sets a foundational framework for neuroscientists seeking to integrate ANN methodologies into their research arsenal. By striking a balance between computational sophistication and biological verisimilitude, ANNs offer a promising avenue for exploring the vast landscapes of neural systems. This paper invites further discourse and development in ensuring these artificial systems can provide robust models and explanations for complex neurobiological phenomena.