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CLOCS: Contrastive Learning of Cardiac Signals Across Space, Time, and Patients (2005.13249v3)

Published 27 May 2020 in cs.LG, eess.SP, and stat.ML

Abstract: The healthcare industry generates troves of unlabelled physiological data. This data can be exploited via contrastive learning, a self-supervised pre-training method that encourages representations of instances to be similar to one another. We propose a family of contrastive learning methods, CLOCS, that encourages representations across space, time, \textit{and} patients to be similar to one another. We show that CLOCS consistently outperforms the state-of-the-art methods, BYOL and SimCLR, when performing a linear evaluation of, and fine-tuning on, downstream tasks. We also show that CLOCS achieves strong generalization performance with only 25\% of labelled training data. Furthermore, our training procedure naturally generates patient-specific representations that can be used to quantify patient-similarity.

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Authors (3)
  1. Dani Kiyasseh (10 papers)
  2. Tingting Zhu (46 papers)
  3. David A. Clifton (54 papers)
Citations (165)

Summary

Contrastive Learning of Cardiac Signals Across Space, Time, and Patients

The research paper "CLOCS: Contrastive Learning of Cardiac Signals Across Space, Time, and Patients" by Dani Kiyasseh et al. presents a novel approach to leveraging unlabelled physiological data prevalent in the healthcare sector. The paper introduces a family of self-supervised pre-training methods, termed CLOCS, which are designed to learn representations that are invariant across temporal and spatial domains and patient identities. The methodology proposed surpasses the performance of state-of-the-art contrastive learning frameworks such as BYOL and SimCLR when evaluated on various cardiac arrhythmia classification tasks, particularly when restricted to 25% of labelled training data.

Methodological Contribution

The paper presents CLOCS with three key components: Contrastive Multi-segment Coding (CMSC), Contrastive Multi-lead Coding (CMLC), and Combined Contrastive Multi-segment Multi-lead Coding (CMSMLC). These approaches redefine the shared context in contrastive learning to focus on patient-specific information from ECG signals, exploiting both temporal and spatial features across multiple leads. Notably, CMSC and CMSMLC consistently demonstrated superior generalization capabilities over competing frameworks.

Results and Numerical Evidence

One of the most significant numerical results highlighted is the robust performance of CLOCS methods, particularly CMSC, showing a noticeable improvement in AUC scores for cardiac arrhythmia classification tasks. CMSC achieved a test AUC of 0.896 on the Chapman dataset with only 50% of labelled data, outperforming SimCLR by approximately 15.8%. This robust optimization extends the boundaries of utilizing physiological data without heavy dependence on labelled datasets and suggests promising applications in real-world medical settings.

Practical and Theoretical Implications

The patient-specific nature of the learned representations suggests potential applications in clustering, patient-similarity quantification, and enhanced interpretability of network outputs in clinical practice. These implications are particularly relevant for tasks like subgroup identification for diseases where patient similarity plays a crucial role. Furthermore, the proposed framework establishes a foundation for exploring multi-modal and cross-domain transfer through self-supervision, potentially extending its application beyond ECGs to other modalities commonly associated with physiological signals.

Speculations on AI Development

The methods proposed in CLOCS provide a promising avenue for future developments in AI applications within healthcare. Their ability to achieve high performance with reduced labelled data paints a picture of more efficient and scalable solutions in medical diagnostics. As AI continues to integrate into healthcare systems, advancing self-supervised learning methods such as CLOCS could further decrease the reliance on costly and labor-intensive data labelling processes, thereby democratizing access to AI-driven diagnostics.

Overall, the CLOCS framework presents a compelling enhancement to existing contrastive learning methodologies by incorporating patient-level context into the learning process, thus achieving improved representation and generalization capabilities across sparse labelled datasets and revealing pathways for broader applications in AI-powered healthcare solutions.