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Memory-Based Graph Networks (2002.09518v2)

Published 21 Feb 2020 in cs.LG, cs.NE, and stat.ML

Abstract: Graph neural networks (GNNs) are a class of deep models that operate on data with arbitrary topology represented as graphs. We introduce an efficient memory layer for GNNs that can jointly learn node representations and coarsen the graph. We also introduce two new networks based on this layer: memory-based GNN (MemGNN) and graph memory network (GMN) that can learn hierarchical graph representations. The experimental results shows that the proposed models achieve state-of-the-art results in eight out of nine graph classification and regression benchmarks. We also show that the learned representations could correspond to chemical features in the molecule data. Code and reference implementations are released at: https://github.com/amirkhas/GraphMemoryNet

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Authors (5)
  1. Amir Hosein Khasahmadi (9 papers)
  2. Kaveh Hassani (20 papers)
  3. Parsa Moradi (7 papers)
  4. Leo Lee (1 paper)
  5. Quaid Morris (11 papers)
Citations (86)

Summary

  • The paper introduces a novel memory layer that enhances hierarchical graph representations by combining multi-head memory keys with convolution-based aggregation.
  • Empirical results show that the proposed MemGNN and GMN architectures achieve state-of-the-art performance across eight out of nine benchmarks on graph tasks.
  • The study demonstrates that leveraging global graph features alleviates over-smoothing in deep networks, offering a robust alternative to traditional message-passing methods.

Memory-Based Graph Networks

The paper "Memory-Based Graph Networks" explores advancements in Graph Neural Networks (GNNs) through the introduction of a novel memory layer that enhances hierarchical representation learning for graph-structured data. The paper presents two new architectures: Memory-based Graph Neural Networks (MemGNN) and Graph Memory Networks (GMN), both leveraging this memory layer to efficiently handle node representation and graph coarsening tasks.

Methodology

The core innovation in this paper is the development of a memory layer integrated into GNNs, designed to improve efficiency and performance by learning both node representations and graph hierarchical structures simultaneously. These memory layers incorporate multi-head arrays of memory keys and a convolution operator to facilitate the aggregation of soft cluster assignments from various heads. Unlike traditional GNNs, which depend on message passing through local graph topology, the memory layers exploit global graph features, which alleviates the over-smoothing problem that is often encountered with deeper graph networks.

The paper outlines two specific network architectures utilizing the memory layer:

  1. MemGNN: Combines traditional GNN layers for initial node representation learning with stacked memory layers for hierarchical representation. This architecture maintains some local neighborhood information through message passing.
  2. GMN: Comprises solely memory layers to achieve hierarchical embeddings without relying on message passing, treating nodes as a set of permutation-invariant representations.

Results

The empirical validation of these architectures on a variety of graph classification and regression tasks demonstrates exceptional performance. Specifically, the proposed models achieve state-of-the-art results in eight out of nine benchmarks, surpassing prior models in datasets such as Enzymes, DD, Proteins, and others. Notably, GMN exhibited superior results compared to MemGNN in most instances, suggesting that leveraging global topological embeddings provides additional beneficial context beyond local adjacency information.

Implications

The introduction of memory layers significantly improves the efficiency of graph representation learning, providing a robust alternative to the traditional message-passing paradigm of GNNs. This novel approach aligns with the ongoing evolution of neural networks where external memory mechanisms are increasingly being incorporated to enhance learning capabilities, particularly for tasks requiring complex pattern recognition and hierarchical data processing.

The research illustrates the potential for memory-enhanced neural architectures to capture and leverage high-level graph hierarchies, which could extend their applicability beyond the studied domains into any domain where understanding structured relationships is crucial. Furthermore, the ability to recognize meaningful substructures, such as chemical groups within molecules, suggests applications in cheminformatics and drug design.

Future Directions

The paper opens avenues for further exploration into memory-augmented neural networks, particularly in the context of graph data. Potential future research includes extending the framework for node classification tasks, integrating other graph diffusion techniques for topological embedding initialization, and testing in a self-supervised learning context. Moreover, exploring these memory layers in larger networks and real-time applications could further establish their utility in analyzing complex systems and large-scale graphs.

In summary, the inclusion of memory-based structures in GNNs represents a significant refinement in handling graph-structured data, offering promising directions for more adaptive and powerful graph learning models.

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