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Latent ODEs for Irregularly-Sampled Time Series (1907.03907v1)

Published 8 Jul 2019 in cs.LG and stat.ML

Abstract: Time series with non-uniform intervals occur in many applications, and are difficult to model using standard recurrent neural networks (RNNs). We generalize RNNs to have continuous-time hidden dynamics defined by ordinary differential equations (ODEs), a model we call ODE-RNNs. Furthermore, we use ODE-RNNs to replace the recognition network of the recently-proposed Latent ODE model. Both ODE-RNNs and Latent ODEs can naturally handle arbitrary time gaps between observations, and can explicitly model the probability of observation times using Poisson processes. We show experimentally that these ODE-based models outperform their RNN-based counterparts on irregularly-sampled data.

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Authors (3)
  1. Yulia Rubanova (12 papers)
  2. Ricky T. Q. Chen (53 papers)
  3. David Duvenaud (65 papers)
Citations (241)

Summary

Analyzing the Application of Latent ODEs for Irregularly-Sampled Time Series

The paper, "Latent ODEs for Irregularly-Sampled Time Series," by Rubanova, Chen, and Duvenaud, presents a novel method for modeling irregularly-sampled time series data using Ordinary Differential Equations (ODEs). This method involves the introduction of ODE-RNNs, which generalizes Recurrent Neural Networks (RNNs) by incorporating continuous-time hidden dynamics defined by ODEs. This framework addresses significant challenges in handling non-uniform intervals prevalent in many real-world applications, such as medical or business settings.

Motivation and Methodology

RNNs have been the de facto standard for modeling time series data, yet they struggle with irregular sampling due to their discrete time step paradigm. The authors propose addressing this limitation by adopting continuous-time models, which maintain hidden states over arbitrary time gaps. The key innovation, the ODE-RNN, computes hidden states using an ODE solver in between observations, providing an effective framework for modeling continuous dynamics.

Two main applications are explored: as a standalone autoregressive model and as an enhancement for the recognition network of the Latent ODE model. The latter leverages ODE-RNNs for variational inference, treating the continuous trajectories as mappings from an initial latent state. This setup also allows the modeling of observation time distributions via Poisson processes, enriching the model’s ability to understand and predict sample distributions over time.

Experimental Findings

The authors evaluated the ODE-based models on several datasets, including synthetic and real-world datasets like MuJoCo and Physionet. The results consistently show that the ODE-RNN and Latent ODE models outperform traditional RNN models, particularly when the data is sparse. For example, in the interpolation tasks on the MuJoCo dataset, the ODE-RNN demonstrated lower mean squared error (MSE) compared to the RNN variants. Moreover, the Latent ODE models effectively handle both interpolation and extrapolation tasks, maintaining predictive accuracy even with increased sparsity.

Implications and Future Directions

The incorporation of continuous-time modeling marks a significant shift in time series analysis, moving away from discrete-time approximations. This research opens avenues for more robust handling of irregular data, crucial in fields like healthcare, where observation frequencies vary greatly. The ability to accurately model and predict under these conditions provides a substantial advantage.

The results suggest strong potential for expansion into other domains where time series data exhibit irregular sampling patterns. Future work may explore optimizing ODE solver integration within neural networks, exploring more complex state dynamics, and applying these principles to multi-modal datasets. Additionally, there is potential for integrating these models with other forms of probabilistic reasoning, pushing the boundaries of uncertainty quantification in time series forecasting.

The paper lays a foundation for broader continuous-time modeling applications, emphasizing the significance of preserving temporal information inherent in irregularly-sampled data. The benefits of such models are broadly applicable, enhancing both theoretical understanding and practical implementations in machine learning.

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