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Deep neural networks can predict mortality from 12-lead electrocardiogram voltage data (1904.07032v3)

Published 15 Apr 2019 in q-bio.QM, cs.LG, and stat.ML

Abstract: The electrocardiogram (ECG) is a widely-used medical test, typically consisting of 12 voltage versus time traces collected from surface recordings over the heart. Here we hypothesize that a deep neural network can predict an important future clinical event (one-year all-cause mortality) from ECG voltage-time traces. We show good performance for predicting one-year mortality with an average AUC of 0.85 from a model cross-validated on 1,775,926 12-lead resting ECGs, that were collected over a 34-year period in a large regional health system. Even within the large subset of ECGs interpreted as 'normal' by a physician (n=297,548), the model performance to predict one-year mortality remained high (AUC=0.84), and Cox Proportional Hazard model revealed a hazard ratio of 6.6 (p<0.005) for the two predicted groups (dead vs alive one year after ECG) over a 30-year follow-up period. A blinded survey of three cardiologists suggested that the patterns captured by the model were generally not visually apparent to cardiologists even after being shown 240 paired examples of labeled true positives (dead) and true negatives (alive). In summary, deep learning can add significant prognostic information to the interpretation of 12-lead resting ECGs, even in cases that are interpreted as 'normal' by physicians.

Application of Deep Neural Networks for Mortality Prediction using ECG Data

This paper presents a detailed investigation into the development and application of deep neural networks (DNNs) for predicting one-year all-cause mortality using voltage-time traces derived from 12-lead resting electrocardiograms (ECGs). The paper leverages a substantial dataset of over 1.8 million ECGs collected from approximately 400,000 patients over a span of 34 years. This extensive dataset, combined with innovative deep learning methods, provides a robust model capable of offering prognostic information that surpasses traditional ECG-derived metrics and clinical interpretations.

Key Numerical Results

The DNN achieved an impressive average area under the receiver operating characteristic curve (AUC) of 0.85 across the entire dataset. Notably, when restricted to ECGs interpreted as "normal" by physicians, the model maintained a high AUC of 0.84. Additional inclusion of basic demographic variables such as age and sex further enhanced the performance, raising the AUC to 0.847. Comparatively, models using traditional ECG measurements and pattern diagnostic labels demonstrated lower prognostic efficacy, with AUC values of 0.772 and 0.810, respectively, when enhanced with demographic data.

A pivotal finding is the hazard ratio of 6.6 (p<0.005) derived from a Cox Proportional Hazard model for normal ECGs, indicating a significant differentiation in long-term survival based on one-year mortality predictions between the predicted groups.

Methodological Insights

The DNN architecture consisted of five branches, each handling ECG leads that are concurrently recorded, coupled with demographic data inputs. The choice of epochs, learning rate, and dropout layers, alongside parallelized computation on multiple GPUs, ensured computational efficiency and model robustness. Cross-validation was meticulously implemented to validate the model's performance across diverse subsets, mitigating data bias by excluding the same patient from both training and test sets.

The survey conducted with cardiologists highlights the model's ability to discern features within ECG data that are not typically visible to human experts, reinforcing the novelty and potential of machine learning techniques in clinical prognostics.

Implications and Future Prospects

The implications of this paper are profound for clinical practice. The integration of DNNs in ECG interpretation not only holds promise for enhancing risk stratification in cardiovascular care but also for potentially redefining standard prognostic methodologies. The findings suggest that machine learning can uncover subtle, novel patterns within ECG data that are overlooked in conventional analysis.

Moreover, the capacity to predict mortality based solely on ECG data suggests avenues for further research into specific cardiovascular outcomes. Future directions involve the use of similarly structured models for predicting disease-specific endpoints, enhanced validation across other regional datasets to ensure generalizability, and exploration into personalized medicine applications to optimize patient management and reduce mortality risk.

In summary, this paper provides a comprehensive analysis of how deep learning can significantly enrich the prognostic capabilities of ECG interpretations, setting a new benchmark for predictive modeling in cardiovascular healthcare.

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Authors (15)
  1. Sushravya Raghunath (2 papers)
  2. Alvaro E. Ulloa Cerna (2 papers)
  3. Linyuan Jing (4 papers)
  4. David P. vanMaanen (3 papers)
  5. Joshua Stough (1 paper)
  6. Dustin N. Hartzel (1 paper)
  7. Joseph B. Leader (2 papers)
  8. H. Lester Kirchner (2 papers)
  9. Christopher W. Good (2 papers)
  10. Aalpen A. Patel (3 papers)
  11. Brian P. Delisle (1 paper)
  12. Amro Alsaid (2 papers)
  13. Dominik Beer (1 paper)
  14. Christopher M. Haggerty (6 papers)
  15. Brandon K. Fornwalt (5 papers)
Citations (173)