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Attention Gated Networks: Learning to Leverage Salient Regions in Medical Images (1808.08114v2)

Published 22 Aug 2018 in cs.CV

Abstract: We propose a novel attention gate (AG) model for medical image analysis that automatically learns to focus on target structures of varying shapes and sizes. Models trained with AGs implicitly learn to suppress irrelevant regions in an input image while highlighting salient features useful for a specific task. This enables us to eliminate the necessity of using explicit external tissue/organ localisation modules when using convolutional neural networks (CNNs). AGs can be easily integrated into standard CNN models such as VGG or U-Net architectures with minimal computational overhead while increasing the model sensitivity and prediction accuracy. The proposed AG models are evaluated on a variety of tasks, including medical image classification and segmentation. For classification, we demonstrate the use case of AGs in scan plane detection for fetal ultrasound screening. We show that the proposed attention mechanism can provide efficient object localisation while improving the overall prediction performance by reducing false positives. For segmentation, the proposed architecture is evaluated on two large 3D CT abdominal datasets with manual annotations for multiple organs. Experimental results show that AG models consistently improve the prediction performance of the base architectures across different datasets and training sizes while preserving computational efficiency. Moreover, AGs guide the model activations to be focused around salient regions, which provides better insights into how model predictions are made. The source code for the proposed AG models is publicly available.

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Authors (7)
  1. Jo Schlemper (27 papers)
  2. Ozan Oktay (34 papers)
  3. Michiel Schaap (8 papers)
  4. Mattias Heinrich (15 papers)
  5. Bernhard Kainz (122 papers)
  6. Ben Glocker (143 papers)
  7. Daniel Rueckert (335 papers)
Citations (1,346)

Summary

Insightful Overview of "Attention Gated Networks: Learning to Leverage Salient Regions in Medical Images"

The paper "Attention Gated Networks: Learning to Leverage Salient Regions in Medical Images" by Jo Schlemper et al. presents a significant advancement in the field of medical image analysis through the introduction of Attention Gated (AG) models. These models are designed to enhance the performance of convolutional neural networks (CNNs) by learning to focus selectively on salient regions of medical images, thereby improving both classification and segmentation outcomes.

Summary of Contributions

The primary innovation of this paper is the development of AG models that can be seamlessly integrated into existing CNN architectures, such as VGG and U-Net. The core functionality of AGs is to suppress irrelevant regions within an image while emphasizing features that are crucial for the task at hand. This approach eliminates the need for external modules for tissue or organ localization, thus streamlining the analysis process. The following are key contributions of the paper:

  1. Novel AG Mechanism: The AG models employ a soft attention mechanism that is trainable end-to-end. This mechanism computes attention coefficients that highlight salient areas without significant computational overhead, thereby enhancing model sensitivity and accuracy.
  2. Application in Classification and Segmentation: The proposed models were evaluated in two challenging applications: scan plane detection in fetal ultrasound screening and pancreas segmentation in 3D CT images. In both cases, AGs improved prediction performance and reduced false positives.
  3. Consistency and Efficiency: The experimental results demonstrated that AG models consistently outperformed their base architectures across different datasets and training sizes, maintaining computational efficiency.
  4. Interpretability: The attention mechanism enhances the interpretability of model predictions, providing insights into how and why certain regions are focused upon.

Quantitative Results

The numerical results presented in the paper are compelling. For instance, the Attention U-Net model achieved a Dice similarity coefficient of up to 0.840 for pancreas segmentation, which is a notable improvement over the baseline U-Net's 0.814. Moreover, in a train/test split scenario of 30/120 on the CT-150 dataset, the model demonstrated consistent performance with a Dice score improvement of approximately 0.03. In fetal ultrasound scan plane detection, the AG-Sononet exhibited an accuracy of 0.980 and an F1 score of 0.933, outperforming the baseline Sononet by significant margins with a minimal increase in the number of parameters.

Theoretical and Practical Implications

The introduction of AGs carries several important implications:

  1. Enhanced Feature Utilization: By learning to concentrate on salient regions, AGs enable more efficient use of CNN parameters and feature maps. This reduces the redundancy often encountered in multi-stage models and improves overall model performance.
  2. Reduction in Model Complexity: The ability to integrate AGs into existing CNN architectures without significant computational overhead simplifies the model design and reduces the need for separate localization stages.
  3. Improved Clinical Workflow: The increased accuracy and reduced false positive rates provided by AG models can enhance the reliability of automated medical image analysis systems, thereby supporting clinical decision-making and improving workflow efficiency.

Future Developments

Future research may explore several avenues based on the findings of this paper:

  1. Integration with Other Architectures: Extending AGs to more complex architectures, such as those involving residual or dense connections, could further enhance performance in various medical imaging tasks.
  2. Real-time Applications: The efficient computation of attention maps suggests a potential for real-time applications in clinical settings, particularly in scenarios requiring immediate analysis and feedback.
  3. Explainable AI: The improved interpretability of predictions through attention maps could contribute to the development of explainable AI systems, which are critical for gaining clinician trust and facilitating the adoption of AI in healthcare.

Conclusion

The "Attention Gated Networks: Learning to Leverage Salient Regions in Medical Images" paper presents a significant advancement in CNN-based medical image analysis. By introducing AGs, the authors have provided a mechanism to enhance model performance through the selective focus on relevant image regions. The robust quantitative results and the practical implications of AGs underscore their potential to improve automated analysis systems and support clinical workflows. Future research building upon this foundation may further integrate AGs with advanced architectures and explore their application in real-time and explainable AI contexts.