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BIRNet: Brain Image Registration Using Dual-Supervised Fully Convolutional Networks (1802.04692v1)

Published 13 Feb 2018 in cs.CV

Abstract: In this paper, we propose a deep learning approach for image registration by predicting deformation from image appearance. Since obtaining ground-truth deformation fields for training can be challenging, we design a fully convolutional network that is subject to dual-guidance: (1) Coarse guidance using deformation fields obtained by an existing registration method; and (2) Fine guidance using image similarity. The latter guidance helps avoid overly relying on the supervision from the training deformation fields, which could be inaccurate. For effective training, we further improve the deep convolutional network with gap filling, hierarchical loss, and multi-source strategies. Experiments on a variety of datasets show promising registration accuracy and efficiency compared with state-of-the-art methods.

Citations (234)

Summary

  • The paper introduces a dual-supervised approach combining coarse deformation fields and fine image similarity, reducing the need for precise ground-truth data.
  • It utilizes an advanced U-Net variant with gap filling and hierarchical loss layers to boost feature learning, accuracy, and computational efficiency.
  • Experiments on multiple datasets show superior Dice Similarity Coefficients and faster, parameter-free processing compared to traditional registration methods.

Overview of BIRNet: Brain Image Registration Using Dual-Supervised Fully Convolutional Networks

The paper presents "BIRNet," a deep learning-centric framework designed to improve the process of brain image registration through the use of dual-supervised fully convolutional networks (FCNs). This method addresses challenges inherent in obtaining accurate registration in medical imaging, specifically by cleverly circumventing the difficulty of acquiring ground-truth deformation fields, which are typically hard to generate manually.

Key Contributions

The primary contribution of the work is the hierarchical dual-supervised strategy that effectively integrates two forms of guidance: coarse guidance via deformation fields and fine guidance from image similarity. This dual approach enhances the system's robustness by reducing dependency on potentially inaccurate training deformation fields. Furthermore, the architecture relies on an advanced variant of the U-Net model, incorporating gap filling, multi-channel inputs, and hierarchical loss layers to achieve higher feature learning, accuracy, and computational efficiency.

Experimental Setup and Results

The efficacy of BIRNet is validated across several datasets, including LPBA40, IBSR18, CUMC12, MGH10, and IXI30. Notably, BIRNet demonstrates superior accuracy over traditional methods such as Diffeomorphic Demons, FNIRT, and SyN, particularly in the LPBA40 dataset, where BIRNet exhibits the highest Dice Similarity Coefficient (DSC) in 35 out of 54 assessed ROIs. Furthermore, the method displays adaptability to multiple datasets without requiring parameter tuning, which provides a testament to its practicality and generalizability.

In terms of computational performance, BIRNet accomplishes significant reductions in processing time. It achieves one-pass deformation prediction utilizing GPUs without iterative optimization, resulting in markedly lower computational costs compared to existing methods.

Implications and Future Directions

The implications of this research extend toward efficient and accurate brain image registration in clinical and research settings. By decreasing reliance on ground-truth data and accelerating processing times, BIRNet has the potential to aid in real-time applications and resource-constrained environments.

Future work could aim at improving this framework's adaptability to different imaging modalities or anatomical structures beyond the brain. Enhancements might include integration with additional diffeomorphic constraints to refine the smoothness of the deformation fields and extending the model's ability to accommodate dynamically changing templates during registration.

Conclusion

BIRNet represents a methodological advance in the domain of medical image registration by leveraging deep learning with dual supervision strategies. It offers notable improvements in both accuracy and computation speed, setting a strong precedent for future advancements in automatic image registration frameworks. The ongoing trajectory of this research may significantly impact the development of efficient, scalable registration solutions in medical imaging.