Papers
Topics
Authors
Recent
Gemini 2.5 Flash
Gemini 2.5 Flash
119 tokens/sec
GPT-4o
56 tokens/sec
Gemini 2.5 Pro Pro
43 tokens/sec
o3 Pro
6 tokens/sec
GPT-4.1 Pro
47 tokens/sec
DeepSeek R1 via Azure Pro
28 tokens/sec
2000 character limit reached

Sparse learning of stochastic dynamic equations (1712.02432v1)

Published 6 Dec 2017 in stat.ML and cond-mat.stat-mech

Abstract: With the rapid increase of available data for complex systems, there is great interest in the extraction of physically relevant information from massive datasets. Recently, a framework called Sparse Identification of Nonlinear Dynamics (SINDy) has been introduced to identify the governing equations of dynamical systems from simulation data. In this study, we extend SINDy to stochastic dynamical systems, which are frequently used to model biophysical processes. We prove the asymptotic correctness of stochastics SINDy in the infinite data limit, both in the original and projected variables. We discuss algorithms to solve the sparse regression problem arising from the practical implementation of SINDy, and show that cross validation is an essential tool to determine the right level of sparsity. We demonstrate the proposed methodology on two test systems, namely, the diffusion in a one-dimensional potential, and the projected dynamics of a two-dimensional diffusion process.

User Edit Pencil Streamline Icon: https://streamlinehq.com
Authors (3)
  1. Lorenzo Boninsegna (3 papers)
  2. Feliks Nüske (26 papers)
  3. Cecilia Clementi (30 papers)
Citations (203)

Summary

Sparse Learning of Stochastic Dynamic Equations: An Overview

The paper "Sparse learning of stochastic dynamic equations" explores a significant extension of the Sparse Identification of Nonlinear Dynamics (SINDy) framework for stochastic systems. Traditional SINDy is tailored for deterministic systems, wherein the challenge lies in identifying the governing equations from data. However, many natural processes, particularly in biological contexts, exhibit stochastic dynamics, necessitating a focus on stochastic differential equations (SDEs).

Key Contributions

  1. Extension to Stochastic Dynamics: The paper broadens the application of SINDy to stochastic systems, capturing the inherent noise in biological and other physical processes. This extension leverages stochastic differential equations to model the probabilistic nature of such systems.
  2. Theoretical Validity: The authors assert the asymptotic correctness of their stochastic SINDy approach when the data volume approaches infinity. This claim is substantiated for both original state variables and their projections, ensuring robustness of the method in extracting dynamic equations from large datasets.
  3. Algorithmic Approach: The authors discuss strategies for solving the sparse regression problem central to SINDy. Notably, cross-validation emerges as a crucial step in determining the optimal sparsity level of the model, preventing overfitting and enhancing the interpretability of the learned equations.
  4. Applications: The methodology is demonstrated on two illustrative systems: one-dimensional diffusion within a potential landscape and the two-dimensional projected dynamics of a complex system. These examples underline the framework's utility in describing both microscopic and macroscopic system behaviors.

Results and Implications

The implementation of stochastic SINDy demonstrates strong results in accurately recovering both drift and diffusion terms from simulated data. The inclusion of noise in the model reflects realistic settings, thus bolstering the practical applicability of the approach to real-world problems. The identified models offer insights into the system's dynamics and provide a pathway for further physico-chemical interpretation.

The approach facilitates the learning of effective potentials in systems dictated by stochastic dynamics—such as those encountered in molecular simulations—by effectively handling noise and reducing data dimensionality. Future developments could enhance the model's scalability, allowing its application to high-dimensional systems typically encountered in modern computational research.

Future Directions

The framework's potential future directions are broad and suggest significant implications for the field:

  • Integration with Machine Learning: Combining SINDy with advanced machine learning methods could improve the identification and prediction of complex systems' dynamics.
  • Expansion to Complex Systems: Extending the approach to handle more complex, high-dimensional systems could unlock new realms of application, including finance, climate modeling, and advanced materials science.
  • Real-world Applications: Practical deployment of the methodology in experimental settings, aligning closely with the data-driven modeling needs in industries ranging from pharmaceuticals to material science, may offer groundbreaking insights.

In summary, this paper presents a significant advancement in the application of sparse learning techniques to stochastic dynamical systems, bridging a gap between deterministic modeling frameworks and the stochastic nature of real-world systems. The proposed extensions to the SINDy framework hold promise for insightful analyses and the formulation of predictive models across diverse scientific domains.