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Alzheimer's Disease Diagnostics by Adaptation of 3D Convolutional Network (1607.00455v1)

Published 2 Jul 2016 in cs.LG, q-bio.NC, and stat.ML

Abstract: Early diagnosis, playing an important role in preventing progress and treating the Alzheimer{'}s disease (AD), is based on classification of features extracted from brain images. The features have to accurately capture main AD-related variations of anatomical brain structures, such as, e.g., ventricles size, hippocampus shape, cortical thickness, and brain volume. This paper proposed to predict the AD with a deep 3D convolutional neural network (3D-CNN), which can learn generic features capturing AD biomarkers and adapt to different domain datasets. The 3D-CNN is built upon a 3D convolutional autoencoder, which is pre-trained to capture anatomical shape variations in structural brain MRI scans. Fully connected upper layers of the 3D-CNN are then fine-tuned for each task-specific AD classification. Experiments on the CADDementia MRI dataset with no skull-stripping preprocessing have shown our 3D-CNN outperforms several conventional classifiers by accuracy. Abilities of the 3D-CNN to generalize the features learnt and adapt to other domains have been validated on the ADNI dataset.

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Authors (3)
  1. Ehsan Hosseini-Asl (13 papers)
  2. Robert Keynto (1 paper)
  3. Ayman El-Baz (3 papers)
Citations (261)

Summary

Alzheimer's Disease Diagnostics by Adaptation of 3D Convolutional Network

The paper by Hosseini-Asl et al. presents a significant contribution to the field of Alzheimer's disease (AD) diagnostics through the development and utilization of a 3D Convolutional Neural Network (3D-CNN). This approach leverages the unique ability of deep learning frameworks to extract complex feature representations from brain MRI, which are pivotal in identifying AD-related anatomical changes.

Summary of Key Findings

The authors introduce a 3D-CNN that utilizes a convolutional autoencoder architecture to extract generic features from 3D structural brain MRI scans. The 3D-CNN is designed to detect key AD biomarkers such as variations in ventricular size, hippocampus shape, cortical thickness, and overall brain volume. The deep learning model is pre-trained on the CADDementia dataset and fine-tuned with the ADNI dataset, showcasing superior adaptability and expertise in distinguishing between different subject groups, namely AD, Mild Cognitive Impairment (MCI), and Normal Control (NC).

In comparative evaluations, the proposed 3D-ACNN outperformed traditional classifiers in accuracy without needing skull-stripping preprocessing, highlighting its potential for practical imaging applications. The results indicated high accuracy in several classification tasks, including binary (AD vs. NC, MCI vs. NC) and ternary (AD vs. MCI vs. NC), underscoring the efficacy of the proposed model in differentiating between various stages of cognitive impairment within MRI datasets. Numerical results demonstrate a noteworthy accuracy of 97.6% for AD vs. NC, indicating potential advantages over competing methods utilizing multimodal data.

Implications and Future Directions

The implications of this research are profound, given the ongoing need for early and non-invasive diagnostic tools in managing and potentially mitigating AD progression. The successful adaptation of the pre-trained feature extraction layers across datasets suggests a promising approach for generalized diagnostic applications. The methodology could facilitate advancements in the development of diagnostic frameworks for other neurodegenerative conditions, provided that future research substantiates its effectiveness and robustness against diverse imaging datasets.

Future exploration could focus on expanding this 3D-CNN framework to other domains, such as oncology or cardiology, to enhance diagnostic capabilities and understanding across various medical fields. Further integration with comprehensive patient data, including genetics and clinical history, could additionally refine its diagnostic precision and potentially contribute to personalized medicine approaches.

The paper illustrates a well-structured approach to addressing limitations in current AD diagnostic techniques by employing domain-adaptable neural network models, setting a valuable precedent for the continued evolution of neuroimaging diagnostics.