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Experimental robustness of Fourier Ptychography phase retrieval algorithms (1511.02986v2)

Published 10 Nov 2015 in physics.optics and cs.CV

Abstract: Fourier ptychography is a new computational microscopy technique that provides gigapixel-scale intensity and phase images with both wide field-of-view and high resolution. By capturing a stack of low-resolution images under different illumination angles, a nonlinear inverse algorithm can be used to computationally reconstruct the high-resolution complex field. Here, we compare and classify multiple proposed inverse algorithms in terms of experimental robustness. We find that the main sources of error are noise, aberrations and mis-calibration (i.e. model mis-match). Using simulations and experiments, we demonstrate that the choice of cost function plays a critical role, with amplitude-based cost functions performing better than intensity-based ones. The reason for this is that Fourier ptychography datasets consist of images from both brightfield and darkfield illumination, representing a large range of measured intensities. Both noise (e.g. Poisson noise) and model mis-match errors are shown to scale with intensity. Hence, algorithms that use an appropriate cost function will be more tolerant to both noise and model mis-match. Given these insights, we propose a global Newton's method algorithm which is robust and computationally efficient. Finally, we discuss the impact of procedures for algorithmic correction of aberrations and mis-calibration.

Citations (288)

Summary

  • The paper demonstrates that amplitude-based cost functions outperform intensity-based ones in mitigating noise and calibration errors.
  • It introduces a robust global Newton's method that improves convergence speed and accuracy in handling experimental imperfections.
  • Extensive simulations and experiments confirm that noise and mis-calibration errors scale with intensity, guiding practical algorithm enhancements.

Overview of "Experimental Robustness of Fourier Ptychography Phase Retrieval Algorithms"

The paper "Experimental Robustness of Fourier Ptychography Phase Retrieval Algorithms," presents a comprehensive analysis of various inverse algorithms used in Fourier ptychography, focusing specifically on their robustness in practical experimental settings. Fourier ptychography is a computational microscopy technique that amalgamates wide field-of-view (FOV) with high resolution by capturing a series of low-resolution images at different illumination angles. The captured images are computationally processed to retrieve the high-resolution complex field using phase retrieval algorithms. The authors undertake a detailed comparison of multiple inverse algorithms often employed in such settings, highlighting their performance in the face of common experimental errors such as noise, aberrations, and mis-calibration.

Key Insights and Results

The paper introduces a suite of phase retrieval algorithms, providing an evaluation regarding their error mechanisms and effectiveness in terms of noise tolerance. The paper points to three primary sources of error in Fourier ptychography datasets: noise, aberrations, and calibration inaccuracies. These errors amplify due to the intensity variations between brightfield and darkfield images inherent in ptychographic datasets.

  • Choice of Cost Function: The authors demonstrate that the choice of cost function in the phase retrieval algorithm significantly impacts its robustness. Specifically, they show that amplitude-based cost functions exhibit superior performance compared to intensity-based ones. Amplitude-based algorithms closely match the Poisson noise model, which accounts for variations in intensity-dependent noise, commonly observed in ptychographic datasets.
  • Development of Global Newton's Method: The paper proposes a robust and accurate global Newton's method algorithm that has demonstrated improved performance and convergence speed in handling experimental imperfections compared to existing methods.
  • Simulation and Experimental Validation: Through a series of simulations and experiments, the paper corroborates the hypothesis that both noise and model mis-match errors scale with intensity. The simulations are utilized to assess the robustness of different algorithms in controlled conditions, which then guide experimental validations.

Theoretical Implications

The research advances the theoretical understanding of phase retrieval algorithms, particularly the nuances in their performance when applied to Fourier ptychography. The paper posits that robust error-tolerant algorithms should integrate a noise model that aligns with the actual noise characteristics of the dataset—primarily demonstrated through amplitude-based cost functions aligned with Poisson-like noise models.

Practical Implications

From a practical standpoint, this work informs the development and deployment of more robust computational imaging systems that can operate reliably under typical experimental conditions. Applications in biomedical imaging, particularly where high-resolution imaging over a large field-of-view is crucial, could greatly benefit from deploying the proposed algorithms. The algorithmic improvements, including those for aberration and mis-calibration correction, suggest potential enhancements in automated imaging setups, contributing to advances in fields such as digital pathology and live cell imaging.

Future Directions

Given the paper's focus on algorithmic robustness, further research could explore enhanced noise modeling techniques and adaptive algorithms that dynamically compensate for evolving experimental errors. This could pave the way for imaging systems with even higher resilience and accuracy, potentially enabling new applications in dynamic and challenging environments. Additionally, the integration of machine learning techniques to predict and correct error sources in real-time could mark a significant advancement in Fourier ptychographic methods and broader imaging technologies.

In conclusion, this paper provides valuable insights into the resilience of phase retrieval algorithms in Fourier ptychography, offering a path toward the development of more sophisticated and reliable computational imaging methodologies.