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A Geometric Perspective on Sparse Filtrations (1506.03797v1)

Published 11 Jun 2015 in cs.CG

Abstract: We present a geometric perspective on sparse filtrations used in topological data analysis. This new perspective leads to much simpler proofs, while also being more general, applying equally to Rips filtrations and Cech filtrations for any convex metric. We also give an algorithm for finding the simplices in such a filtration and prove that the vertex removal can be implemented as a sequence of elementary edge collapses.

Citations (50)

Summary

A Geometric Perspective on Sparse Filtrations

This paper explores sparse filtrations within the domain of topological data analysis, offering a geometric perspective that both streamlines the proofs of correctness and broadens applicability to Rips and \v Cech filtrations under any convex metric. Sparse filtrations, historically encumbered by complexities in their construction and verification, benefit from a novel approach that circumvents the need for explicitly building homotopy equivalences through simplicial maps. Instead, the paper demonstrates the equivalence and approximation guarantees via geometric reasoning.

Methodological Advancements

The authors propose considering sparse filtrations as a nerve construction in a higher dimension. Central to this approach is the conceptualization of point sampling and ball expansion over time, allowing for a shift away from combinatorial convolutions traditionally associated with topological data analysis. This method extends to \v Cech complexes, where filtered simplicial complexes are generated as nerve filtrations, preserving both geometric properties and persistent homological insights through straightforward convexity arguments.

Numerical and Algorithmic Contributions

Notably, the paper emphasizes the efficient computation of edges and simplices within sparse nerve filtrations. By leveraging a greedy permutation strategy, where points are sampled according to their maximal distance from previously chosen points, the authors present a linear-time edge computation algorithm. The approach relies on packing arguments justified by the small doubling dimension assumption, allowing for a neighborhood search that bounds the number of vertices contributing to a sparse filtration. This ensures computational feasibility and practical applicability in handling large data sets inherent to topological data analysis.

Implications and Future Directions

The introduction of sparse nerve filtrations through a geometric lens bears significant implications for both theoretical exploration and practical deployment within computational topology. By providing an avenue for vertex removal via elementary edge contractions that satisfy the link condition, the paper facilitates the simplification of the filtration without sacrificing homological fidelity. This positions sparse nerve filtrations as a valuable model for persistent homological computation where data sparsity is desired.

Looking forward, this geometric perspective paves the way for advancements in computing persistence barcodes in non-Euclidean metrics, encouraging exploration beyond the scope of typical Euclidean-based computational constraints. Moreover, the insights into simplicial collapses can enrich the development of less computationally intensive algorithms that maintain consistency even in high-dimensional data contexts.

In summary, this paper presents a persuasive argument for shifting toward geometric perspectives in sparse filtration construction, emphasizing the simplification and generalization of existing methods to accommodate broader classes of metric spaces while ensuring efficiency and conceptual elegance in persistent topology analysis.

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