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Incremental Knowledge Base Construction Using DeepDive (1502.00731v4)

Published 3 Feb 2015 in cs.DB, cs.CL, and cs.LG

Abstract: Populating a database with unstructured information is a long-standing problem in industry and research that encompasses problems of extraction, cleaning, and integration. Recent names used for this problem include dealing with dark data and knowledge base construction (KBC). In this work, we describe DeepDive, a system that combines database and machine learning ideas to help develop KBC systems, and we present techniques to make the KBC process more efficient. We observe that the KBC process is iterative, and we develop techniques to incrementally produce inference results for KBC systems. We propose two methods for incremental inference, based respectively on sampling and variational techniques. We also study the tradeoff space of these methods and develop a simple rule-based optimizer. DeepDive includes all of these contributions, and we evaluate DeepDive on five KBC systems, showing that it can speed up KBC inference tasks by up to two orders of magnitude with negligible impact on quality.

Citations (287)

Summary

  • The paper introduces incremental maintenance techniques using delta rules and sampling methods that reduce computation time by up to two orders of magnitude.
  • It details the DeepDive system’s integration of SQL-based grounding with probabilistic inference to efficiently transform unstructured data into a structured knowledge base.
  • Empirical results from diverse domains such as genomics and news demonstrate that the method maintains high-quality extraction while enabling rapid iterative updates.

Incremental Knowledge Base Construction Using DeepDive

The paper "Incremental Knowledge Base Construction Using DeepDive" presents a comprehensive framework designed to tackle the challenges associated with populating structured databases from unstructured data sources, an evolving problem within the realms of knowledge base construction (KBC). The authors introduce DeepDive, an open-source system that leverages database principles and machine learning methodologies to enhance the efficiency and effectiveness of KBC processes. The primary focus of their work is on accelerating the iterative development cycle inherent in KBC systems through incremental maintenance of grounding and inference stages.

Overview of DeepDive

DeepDive is designed to streamline the KBC pipeline, which consists of the extraction, cleaning, and integration of unstructured data into a structured format. Its unique feature is its ability to iterate rapidly over development cycles, enabling efficient refinement of the knowledge base. This capability is critical as KBC systems evolve with new data sources or revised quality requirements.

Key components of DeepDive include:

  • Grounding Phase: Here, DeepDive transforms input data into a factor graph representing the probabilistic relationships among entities. The grounding phase is optimized using traditional SQL-based techniques, which provide a foundation for identifying and managing dependencies among data points.
  • Inference Phase: Inference is conducted on the factor graph to determine the probability distribution of the knowledge base. This involves computationally intensive processes such as Gibbs sampling to assess the marginal probabilities of data tuples. A primary computational challenge addressed in the paper is efficiently updating this inference step as the knowledge base evolves.

Incremental Maintenance Techniques

A significant portion of the paper details the novel incremental techniques developed to handle updates in both the data and the KBC programs without full recomputation. Two central methods are proposed:

  • Incremental Grounding: This method adapts classical view maintenance to reduce redundant calculations by applying "delta rules" that focus on the changes from the prior iteration. This approach alone can provide substantial performance gains, reducing computation time by hundreds of times in some cases.
  • Incremental Inference: Unlike traditional probabilistic models that rebuild from scratch, DeepDive employs sampling-based and variational-based techniques to adjust only where necessary. The paper explores the trade-off spaces of these techniques, providing insights into when each is more appropriate. Specifically, the use of both sampling and variational approaches accounts for changes in data structure—offering flexibility in handling a wide range of updating conditions.

Experimental Validation

The effectiveness of DeepDive is demonstrated across several real-world KBC applications from diverse domains such as news articles, genomics, and pharmacogenomics. The empirical results indicate that DeepDive's incremental techniques lead to two orders of magnitude performance improvements compared to traditional methods, with a negligible impact on the quality of the extracted knowledge.

Implications and Future Directions

DeepDive's contributions lie in its sophisticated handling of iterative updates, an essential feature in dynamic environments where data continually evolves. The integration of database techniques with probabilistic reasoning sets a precedent for future KBC systems aiming to manage large and complex datasets efficiently.

In terms of future developments, promising directions include the further refinement of automatic decision systems for choosing between incremental techniques, especially as systems scale. Additionally, extending DeepDive to handle more complex types of data and relationships will be vital in broadening the applicability of KBC systems across industries and research fields.

The paper presents robust evidence that combining machine learning with traditional database methodologies in an ongoing iterative process can significantly enhance the operational efficiencies of knowledge base construction systems. This approach points towards more responsive and adaptable systems for extracting structured information from the vast unstructured data available today.