Statistics of reversible transitions in two-state trajectories in force-ramp spectroscopy (1401.3920v2)

Abstract: A possible way to extract information about the reversible dissociation of a molecular adhesion bond from force fluctuations observed in force ramp experiments is discussed. For small loading rates the system undergoes a limited number of unbinding and rebinding transitions observable in the so-called force versus extension (FE) curves. The statistics of these transient fluctuations can be utilized to estimate the parameters for the rebinding rate. This is relevant in the experimentally important situation where the direct observation of the reversed FE-curves is hampered, e.g. due to the presence of soft linkers. I generalize the stochastic theory of the kinetics in two-state models to the case of time-dependent kinetic rates and compute the relevant distributions of characteristic forces. While for irreversible systems there is an intrinsic relation between the rupture force distribution and the population of the free-energy well of the bound state, the situation is slightly more complex if reversible systems are considered. For a two-state model, a 'stationary' rupture force distribution that is proportional to the population can be defined and allows to consistently discuss quantities averaged over the transient fluctuations. While irreversible systems are best analyzed in the soft spring limit of small pulling device stiffness and large loading rates, here I argue to use the stiffness of the pulling device as a control parameter in addition to the loading rate.