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Mahotas: Open source software for scriptable computer vision (1211.4907v2)

Published 21 Nov 2012 in cs.CV and cs.SE

Abstract: Mahotas is a computer vision library for Python. It contains traditional image processing functionality such as filtering and morphological operations as well as more modern computer vision functions for feature computation, including interest point detection and local descriptors. The interface is in Python, a dynamic programming language, which is very appropriate for fast development, but the algorithms are implemented in C++ and are tuned for speed. The library is designed to fit in with the scientific software ecosystem in this language and can leverage the existing infrastructure developed in that language. Mahotas is released under a liberal open source license (MIT License) and is available from (http://github.com/luispedro/mahotas) and from the Python Package Index (http://pypi.python.org/pypi/mahotas).

Citations (206)

Summary

  • The paper introduces Mahotas, a high-speed open-source Python library for computer vision that leverages a C++ backend for performance and integrates seamlessly with the Python scientific computing ecosystem.
  • Mahotas provides efficient implementations for various computer vision tasks including interest point detection (SURF), texture analysis (Haralick), morphological operations, and filtering, demonstrating significant performance benefits compared to other libraries.
  • Distributed under the permissive MIT License and featuring a robust, easy-to-use Pythonic interface with no global state, Mahotas offers a reliable and valuable toolkit for researchers in diverse scientific image analysis applications.

Mahotas: A Python Library for Scriptable Computer Vision

This paper introduces Mahotas, an open-source computer vision library designed for the Python programming language. It is a library that integrates well with the scientific computing ecosystem in Python, particularly leveraging the powerful NumPy package. Mahotas has been developed as a high-speed library for traditional image processing tasks such as filtering, morphological operations, and more advanced computer vision tasks like interest point detection and local descriptor computation.

Key Features and Implementation

The implementation of Mahotas is in C++, affording it substantial computational efficiency. However, developers can interact with its functionality through a procedural, Pythonic interface. Importantly, there is a clear separation between the interface and implementation, providing robustness without compromising usability. The library does not manage any global state, thus ensuring reliability across its functions.

Mahotas offers several primary functionalities:

  • Interest Point Detection and Local Descriptors: It implements Speeded-up Robust Features (SURF), essential for keypoint detection and descriptor computation. These features are pivotal in tasks requiring object recognition and feature correspondence.
  • Global Feature Descriptors: This includes Haralick texture features, Zernike moments, local binary patterns, and variants of threshold adjacency statistics, offering users the ability to analyze and classify image textures extensively.
  • Wavelet Decomposition: Both Haar and Daubechies wavelets are supported, providing robust tools for frequency domain analysis and data compression tasks.
  • Morphological Operations: Optimized implementations of erosion and dilation, along with advanced operations constructed from these primitives, are included. These can handle both binary and grayscale images.
  • Filtering and Convolution: Gaussian filtering and edge detection tools are part of Mahotas, facilitating image enhancement and preprocessing steps in many vision pipelines.
  • Polygon Operations: Includes operations for creating convex hulls and drawing polygons.

Performance and Integration

The performance evaluation in this paper highlights Mahotas' competitiveness, particularly against other libraries such as Pymorph and scikits-image. It excels in most operations due to its C++ backend, making it extremely suitable for handling large-scale image processing tasks in scientific analysis environments. For instance, operations like cwatershed segmentation show significant performance advantages.

Mahotas avoids implementing machine learning algorithms within its core design, instead recommending integration with libraries like scikit-learn or Milk. This approach emphasizes specialization and allows users to employ best-of-breed tools without redundancy, enhancing modularity and facilitating innovation in image analysis tasks.

Distribution and Reusability

Distributed under the MIT License, Mahotas is both accessible and flexible for modification and redistribution. It is readily installable via standard Python package management tools, ensuring ease of deployment across diverse computing environments. The library's comprehensive test suite supports its robustness, with user feedback being integral to iterative improvements.

Implications and Future Outlook

In conclusion, the design and functionality of Mahotas make it a highly valuable tool for the scientific community focused on image processing and computer vision. Its integration with Python's scientific stack positions it strategically in research areas requiring intensive data analysis capabilities. Given the ongoing advancements in both computer vision and machine learning fields, future expansions can further enhance Mahotas's capability to accommodate emerging requirements in visual data processing. Researchers and developers can leverage this robust toolkit to explore a diversity of applications from healthcare imaging to automated surveillance systems, indicative of its broad reuse potential.

This paper has thus contributed to the growing ecosystem of Python-oriented scientific computing libraries, highlighting both the importance of seamless integration and the critical nature of performance optimization in applied computational research.